Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 RN7SKP289-201ENST00000517244 295 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.88□□□□□ -1.63
COL18A1P39060 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL133247.2-201ENST00000603236 482 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL18A1P39060 AC017079.2-201ENST00000416102 485 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 AC236972.1-201ENST00000433225 199 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL18A1P39060 AC010342.1-201ENST00000514047 877 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL18A1P39060 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL18A1P39060 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL18A1P39060 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
COL18A1P39060 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL18A1P39060 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL18A1P39060 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.87□□□□□ -1.63
COL18A1P39060 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL18A1P39060 BTF3P5-201ENST00000457252 467 ntBASIC4.87□□□□□ -1.63
COL18A1P39060 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.87□□□□□ -1.63
COL18A1P39060 AC103843.2-201ENST00000530523 682 ntBASIC4.87□□□□□ -1.63
COL18A1P39060 AC010591.1-201ENST00000603941 649 ntBASIC4.87□□□□□ -1.63
COL18A1P39060 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.87□□□□□ -1.63
COL18A1P39060 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL18A1P39060 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
COL18A1P39060 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.87□□□□□ -1.63
COL18A1P39060 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL18A1P39060 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL18A1P39060 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL18A1P39060 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.87□□□□□ -1.63
COL18A1P39060 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.86□□□□□ -1.63
COL18A1P39060 GVINP1-202ENST00000531871 7271 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 RNA5SP424-201ENST00000390988 115 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.86□□□□□ -1.63
COL18A1P39060 SETP4-201ENST00000455717 868 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.86□□□□□ -1.63
COL18A1P39060 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.86□□□□□ -1.63
COL18A1P39060 MIR5186-201ENST00000577504 120 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 MAPK10-303ENST00000641324 3959 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 AC093535.2-201ENST00000624769 2326 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.86□□□□□ -1.63
COL18A1P39060 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 UBE2DNL-203ENST00000474922 222 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC017015.1-201ENST00000477387 286 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC025518.1-201ENST00000479856 347 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC017037.1-201ENST00000508460 471 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 PPBPP1-201ENST00000510807 373 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 RPL23AP94-201ENST00000512518 302 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC023161.2-201ENST00000551218 780 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.86□□□□□ -1.63
COL18A1P39060 AC022146.1-201ENST00000595307 847 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 AL354976.1-201ENST00000613843 387 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AL121890.2-201ENST00000617644 465 ntBASIC4.86□□□□□ -1.63
COL18A1P39060 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
COL18A1P39060 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL18A1P39060 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL18A1P39060 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.85□□□□□ -1.63
COL18A1P39060 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL18A1P39060 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL18A1P39060 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.85□□□□□ -1.63
COL18A1P39060 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.85□□□□□ -1.63
COL18A1P39060 VN1R25P-201ENST00000443385 738 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 VN1R40P-201ENST00000455196 941 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms