Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 BGLT3-201ENST00000564523 994 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.9□□□□□ -1.46
COL6A1P12109 MTCO3P24-201ENST00000572729 782 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.9□□□□□ -1.46
COL6A1P12109 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 AC109347.2-201ENST00000610220 349 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AL592148.2-201ENST00000612210 372 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC022509.4-201ENST00000621404 572 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.9□□□□□ -1.46
COL6A1P12109 MIR4278-201ENST00000636094 69 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 LINC01808-202ENST00000641680 1116 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 CCT8P1-201ENST00000413611 1657 ntBASIC5.9□□□□□ -1.47
COL6A1P12109 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A1P12109 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A1P12109 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.9□□□□□ -1.47
COL6A1P12109 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.9□□□□□ -1.47
COL6A1P12109 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A1P12109 AC018809.2-201ENST00000602436 3823 ntBASIC5.9□□□□□ -1.47
COL6A1P12109 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
COL6A1P12109 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 Z95114.1-201ENST00000624264 14574 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 AP000776.1-201ENST00000530032 1663 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL6A1P12109 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 U3.3-201ENST00000362986 216 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 RNU6-560P-201ENST00000364007 108 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 RNA5SP455-201ENST00000365190 119 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 RNU6-920P-201ENST00000410926 92 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 RPS26P38-201ENST00000414476 348 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 FO393419.3-201ENST00000428741 282 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 CNOT7P1-201ENST00000429006 852 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC068287.1-201ENST00000430283 295 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A1P12109 MTCO1P52-201ENST00000433928 531 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 KRT8P51-201ENST00000438938 274 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 YWHAZP2-201ENST00000440317 728 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC002542.1-201ENST00000440683 193 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 GTF3AP5-201ENST00000442645 697 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 KNOP1P3-201ENST00000446933 426 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 RPS23P7-201ENST00000466210 444 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 HMGN2P25-201ENST00000486956 268 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 AC113430.1-201ENST00000506872 718 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC010285.3-201ENST00000511668 676 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC022447.1-201ENST00000515358 464 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 RNU6-678P-201ENST00000516832 109 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL6A1P12109 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A1P12109 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.89□□□□□ -1.47
COL6A1P12109 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 NPM1P42-201ENST00000560329 862 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AL512347.1-201ENST00000566420 503 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A1P12109 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A1P12109 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 AC068790.7-201ENST00000602347 528 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 AC128687.1-201ENST00000605304 619 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC108747.1-201ENST00000609508 535 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 DLEU2_1.1-201ENST00000612089 120 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AL139418.1-201ENST00000613613 177 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 DLEU2_1.2-201ENST00000614667 120 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC015726.3-201ENST00000624501 418 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL6A1P12109 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 BTBD10P1-201ENST00000549824 1352 ntBASIC5.89□□□□□ -1.47
COL6A1P12109 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
COL6A1P12109 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A1P12109 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 PHKBP1-201ENST00000450951 1951 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms