Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.56□□□□□ -1.52
COL3A1P02461 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.56□□□□□ -1.52
COL3A1P02461 AC015849.6-201ENST00000605454 474 ntBASIC5.56□□□□□ -1.52
COL3A1P02461 AC090948.2-201ENST00000607363 564 ntBASIC5.56□□□□□ -1.52
COL3A1P02461 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.56□□□□□ -1.52
COL3A1P02461 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.56□□□□□ -1.52
COL3A1P02461 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL3A1P02461 AC011330.2-201ENST00000621680 635 ntBASIC5.56□□□□□ -1.52
COL3A1P02461 AP003400.2-201ENST00000624036 666 ntBASIC5.56□□□□□ -1.52
COL3A1P02461 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.56□□□□□ -1.52
COL3A1P02461 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.56□□□□□ -1.52
COL3A1P02461 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL3A1P02461 ERCC6-202ENST00000374127 1782 ntBASIC5.56□□□□□ -1.52
COL3A1P02461 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL3A1P02461 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 SPRR2C-201ENST00000290702 219 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL3A1P02461 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.55□□□□□ -1.52
COL3A1P02461 TBCAP1-201ENST00000436520 327 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 HSFY6P-201ENST00000445573 403 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 AC021146.3-201ENST00000511911 260 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AL132857.1-201ENST00000555180 708 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 AC016839.1-201ENST00000578162 867 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.55□□□□□ -1.52
COL3A1P02461 AC012213.4-201ENST00000606457 354 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 AC021755.4-201ENST00000616620 456 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 AC068880.4-201ENST00000623082 495 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL3A1P02461 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.55□□□□□ -1.52
COL3A1P02461 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.55□□□□□ -1.52
COL3A1P02461 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL3A1P02461 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 AC093591.2-201ENST00000565254 3843 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL3A1P02461 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL3A1P02461 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 SNORD116-1-201ENST00000384335 95 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL3A1P02461 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.54□□□□□ -1.52
COL3A1P02461 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 RPL23AP46-201ENST00000438548 490 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 MED6P1-201ENST00000439659 713 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.54□□□□□ -1.52
COL3A1P02461 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 AC022034.3-201ENST00000471393 478 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 RAP1BP2-201ENST00000478270 544 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 AP001960.1-201ENST00000506494 658 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 FTH1P21-201ENST00000512179 511 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.54□□□□□ -1.52
COL3A1P02461 MTND1P5-201ENST00000517906 940 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AC104115.2-201ENST00000523026 687 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 AC023825.1-201ENST00000566704 1030 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AGGF1P6-201ENST00000569213 976 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.54□□□□□ -1.52
COL3A1P02461 GAS5-AS1-201ENST00000602767 694 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AC113368.1-201ENST00000603736 382 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 MIR7154-201ENST00000620673 73 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 AC006927.3-201ENST00000638789 384 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 LINC02211-204ENST00000642024 1070 ntBASIC5.54□□□□□ -1.52
COL3A1P02461 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
COL3A1P02461 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL3A1P02461 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.53□□□□□ -1.52
COL3A1P02461 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL3A1P02461 ZNF29P-201ENST00000225587 168 ntBASIC5.53□□□□□ -1.52
COL3A1P02461 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL3A1P02461 OR11H4-201ENST00000315409 1082 ntBASIC5.53□□□□□ -1.52
COL3A1P02461 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms