Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC009027.1-201ENST00000604510 479 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AC008555.7-201ENST00000605008 583 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AP001437.1-201ENST00000608783 456 ntBASIC5.72□□□□□ -1.49
RNF4P78317 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AL136295.6-201ENST00000610486 658 ntBASIC5.72□□□□□ -1.49
RNF4P78317 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AC129778.1-202ENST00000623812 261 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AP003122.6-201ENST00000623831 495 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AL591379.1-207ENST00000635982 261 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.72□□□□□ -1.49
RNF4P78317 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AP002907.1-201ENST00000606361 1430 ntBASIC5.72□□□□□ -1.49
RNF4P78317 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AL121768.1-201ENST00000613917 2544 ntBASIC5.72□□□□□ -1.49
RNF4P78317 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.71□□□□□ -1.49
RNF4P78317 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
RNF4P78317 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.71□□□□□ -1.49
RNF4P78317 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
RNF4P78317 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 HDAC1P2-201ENST00000453661 1398 ntBASIC5.71□□□□□ -1.5
RNF4P78317 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 OR9K1P-201ENST00000326513 941 ntBASIC5.71□□□□□ -1.5
RNF4P78317 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
RNF4P78317 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RNF4P78317 RNU6-444P-201ENST00000383988 108 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RNU6-1103P-201ENST00000384150 107 ntBASIC5.71□□□□□ -1.5
RNF4P78317 SNORA70.9-201ENST00000384370 135 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 RPS7P8-201ENST00000418311 581 ntBASIC5.71□□□□□ -1.5
RNF4P78317 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 PIGFP2-201ENST00000421400 651 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL589872.1-201ENST00000426602 288 ntBASIC5.71□□□□□ -1.5
RNF4P78317 NANOGP6-201ENST00000429190 847 ntBASIC5.71□□□□□ -1.5
RNF4P78317 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 RSU1P2-202ENST00000437884 485 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 FDX1P2-201ENST00000450769 375 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RPS27AP3-201ENST00000453803 454 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RPL37P3-201ENST00000456825 293 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AC005229.2-201ENST00000456995 399 ntBASIC5.71□□□□□ -1.5
RNF4P78317 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 AC073594.1-201ENST00000462065 364 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RN7SL165P-201ENST00000477476 291 ntBASIC5.71□□□□□ -1.5
RNF4P78317 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RNF4P78317 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 RPS29P25-201ENST00000481709 171 ntBASIC5.71□□□□□ -1.5
RNF4P78317 TMEM251P1-201ENST00000503717 318 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AC034159.1-201ENST00000513885 583 ntBASIC5.71□□□□□ -1.5
RNF4P78317 EIF3KP3-201ENST00000514461 639 ntBASIC5.71□□□□□ -1.5
RNF4P78317 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 Y_RNA.672-201ENST00000516289 104 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RNU6-1153P-201ENST00000516760 105 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RN7SKP35-201ENST00000517210 151 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.71□□□□□ -1.5
RNF4P78317 HSPE1P2-201ENST00000554777 306 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.71□□□□□ -1.5
RNF4P78317 MIR4637-201ENST00000582405 84 ntBASIC5.71□□□□□ -1.5
RNF4P78317 MAGOH2P-202ENST00000584384 429 ntBASIC5.71□□□□□ -1.5
RNF4P78317 NRBF2P1-201ENST00000587407 859 ntBASIC5.71□□□□□ -1.5
RNF4P78317 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 CKS1BP3-201ENST00000600888 237 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AC010680.3-201ENST00000604215 520 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL359999.1-201ENST00000604513 294 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL035413.2-201ENST00000604801 525 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL512652.1-201ENST00000619006 500 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL137067.2-201ENST00000621202 131 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 AC139792.3-201ENST00000623525 224 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RNF4P78317 AC116667.2-201ENST00000641075 823 ntBASIC5.71□□□□□ -1.5
RNF4P78317 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 AC096921.2-201ENST00000561507 1916 ntBASIC5.71□□□□□ -1.5
RNF4P78317 AC092692.1-201ENST00000623625 2595 ntBASIC5.71□□□□□ -1.5
RNF4P78317 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
RNF4P78317 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.71□□□□□ -1.5
RNF4P78317 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms