Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SNORD56.6-201ENST00000384569 71 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNU6-225P-201ENST00000384613 103 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 SNORD116-23-201ENST00000384645 92 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 ATP5F1P4-201ENST00000397288 746 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 TPT1P2-201ENST00000413105 503 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC009302.1-201ENST00000417147 390 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC048351.1-201ENST00000420064 602 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 CENPIP1-201ENST00000425713 902 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC124944.2-201ENST00000429866 1242 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AL031663.1-201ENST00000437445 219 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 PPIAP17-201ENST00000438507 471 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 RAB11AP1-201ENST00000442978 646 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 CEACAMP7-201ENST00000444105 496 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 DDX39BP2-208ENST00000453923 258 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 RPL23AP12-201ENST00000467573 473 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RPL7P1-201ENST00000468161 747 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RPL7P9-201ENST00000468715 747 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC072039.1-201ENST00000477611 581 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RN7SL447P-201ENST00000494711 245 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC093281.2-201ENST00000510153 597 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNY4P37-201ENST00000516225 96 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC126177.5-201ENST00000549599 178 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC012414.6-201ENST00000568241 401 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 MIR4436B2-201ENST00000581415 91 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC090312.2-201ENST00000582687 378 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 MIR4436B1-201ENST00000583272 91 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD3P31249 NTAN1P1-201ENST00000603150 646 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC087763.1-201ENST00000603391 286 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXD3P31249 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXD3P31249 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 AC011493.1-201ENST00000596753 1632 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC138907.8-201ENST00000623981 2256 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 AC107027.3-201ENST00000565095 3473 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD3P31249 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXD3P31249 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC131971.1-201ENST00000332881 1482 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 MTND4P26-201ENST00000415971 1359 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC092681.1-201ENST00000297369 291 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AL672167.1-206ENST00000356293 943 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RNU6-1066P-201ENST00000363573 105 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 MIR765-201ENST00000390226 114 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXD3P31249 MIR550A3-201ENST00000390735 95 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AL589647.1-201ENST00000402485 466 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 NCSTNP1-201ENST00000406229 144 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RNU6-648P-201ENST00000410190 107 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RPL37P18-201ENST00000411602 243 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXD3P31249 BOLA3P4-201ENST00000418151 400 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms