Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC096644.3-201ENST00000416788 338 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC083863.1-201ENST00000438811 231 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 YWHAQP9-201ENST00000445891 512 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 MTND2P25-201ENST00000449028 610 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 RPL7AP52-201ENST00000458096 790 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC018797.3-201ENST00000513388 1241 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC025423.2-201ENST00000537570 439 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 HNRNPCP4-201ENST00000571636 900 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC023575.1-201ENST00000580510 358 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 GMCL1P2-201ENST00000605230 823 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 MIR6715B-201ENST00000637172 77 ntBASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS29Q9UBQ0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 OR10AB1P-202ENST00000641219 1686 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 RNA5SP399-201ENST00000364003 117 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AL391219.1-201ENST00000422570 483 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 MTND2P11-201ENST00000423638 648 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AC115285.1-201ENST00000424879 736 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 RPS11P1-201ENST00000451072 473 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AL132838.2-201ENST00000492041 314 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 RPL7P24-201ENST00000493052 752 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 SNORA31.9-201ENST00000516429 84 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 MIR3939-201ENST00000582614 106 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 KPNA2P3-201ENST00000584190 848 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AC116447.1-201ENST00000613153 453 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 AP003072.5-201ENST00000623872 773 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 OR52H1-202ENST00000641796 1061 ntBASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS29Q9UBQ0 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 CASC19-261ENST00000641853 1638 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 RNU4-7P-201ENST00000364758 141 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 RNU6-1279P-201ENST00000383917 103 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 RNU6-146P-201ENST00000384602 108 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 USP12PY-201ENST00000427677 1064 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AL356276.2-201ENST00000435919 558 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AC104306.1-201ENST00000449702 371 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 MRPL49P2-201ENST00000521066 465 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 SNX6P1-201ENST00000601728 1224 ntBASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS29Q9UBQ0 AC025946.2-201ENST00000603398 234 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms