Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL050321.1-201ENST00000432363 400 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RN7SL189P-201ENST00000468631 289 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC092324.1-201ENST00000468671 324 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RN7SL244P-201ENST00000493405 297 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RPS24P16-201ENST00000497294 392 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 IGBP1P4-201ENST00000503202 879 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 HMGB3P13-201ENST00000511263 607 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC092709.1-201ENST00000521355 1045 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 OR8Q1P-201ENST00000526467 655 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC008033.2-201ENST00000542626 177 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC023161.2-201ENST00000551218 780 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC103987.3-201ENST00000582071 292 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL031985.2-201ENST00000600955 480 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL627230.1-201ENST00000613077 211 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL591926.8-201ENST00000616876 211 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 CDRT1-208ENST00000630868 794 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AP005435.3-201ENST00000531260 3198 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL606537.1-201ENST00000607258 2011 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 CR381670.1-201ENST00000624291 1693 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 RNU1-74P-201ENST00000384108 171 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL450992.3-201ENST00000413192 568 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL133482.1-201ENST00000415988 498 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL354868.1-201ENST00000417077 482 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 DNAJA1P2-201ENST00000421360 1197 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL360081.1-201ENST00000428299 555 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC010153.1-201ENST00000432862 727 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC129850.1-201ENST00000436203 508 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ATP5C1P1-201ENST00000441945 895 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 RPL7P59-201ENST00000447700 943 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL034418.1-201ENST00000448675 860 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 SEPT7P3-201ENST00000455017 621 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 RPL7P16-201ENST00000479738 738 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC092045.1-201ENST00000495716 1231 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC011352.3-201ENST00000505162 593 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 COX6B1P5-201ENST00000509843 249 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 MTCYBP37-201ENST00000510642 1133 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC010285.3-201ENST00000511668 676 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 RNU6-885P-201ENST00000516607 104 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms