Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC31A1P1-201ENST00000451221 567 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 AC068254.2-201ENST00000623938 3577 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A3P12111 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A3P12111 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL6A3P12111 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A3P12111 AL133477.1-201ENST00000457472 514 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AP000916.1-201ENST00000533869 835 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC026368.1-201ENST00000614934 690 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A3P12111 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 RBMY1KP-201ENST00000423480 476 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC021660.1-201ENST00000465006 554 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 MIR4435-1-201ENST00000582552 80 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A3P12111 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 SMG1P4-204ENST00000523028 4131 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 SNORD35B-201ENST00000363660 87 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 AL121878.1-201ENST00000418638 859 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 HLA-N-201ENST00000437516 135 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.87□□□□□ -1.79
COL6A3P12111 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC3.87□□□□□ -1.79
COL6A3P12111 AC005520.3-201ENST00000602874 370 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 AL512643.1-201ENST00000635735 524 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
COL6A3P12111 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.87□□□□□ -1.79
COL6A3P12111 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A3P12111 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A3P12111 HIGD1AP4-201ENST00000430194 280 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 RPL23AP69-201ENST00000431134 458 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 NMNAT1P2-201ENST00000435192 860 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 AC108938.1-201ENST00000451204 136 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 CASC19-203ENST00000523510 575 ntTSL 3 BASIC3.87□□□□□ -1.79
COL6A3P12111 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.87□□□□□ -1.79
COL6A3P12111 AC091905.2-201ENST00000623143 306 ntBASIC3.87□□□□□ -1.79
COL6A3P12111 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
COL6A3P12111 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
COL6A3P12111 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A3P12111 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC3.87□□□□□ -1.79
COL6A3P12111 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.86□□□□□ -1.79
COL6A3P12111 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 RN7SKP186-201ENST00000365371 303 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 RPS4XP8-201ENST00000402039 771 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 AC000041.1-201ENST00000439655 175 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 RPS15AP29-201ENST00000445539 400 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC006445.1-201ENST00000491925 405 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 RNU6-991P-201ENST00000516168 107 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC3.86□□□□□ -1.79
COL6A3P12111 MIR4425-201ENST00000580572 84 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 AL139089.1-201ENST00000620372 975 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AP003485.2-201ENST00000623636 610 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC026422.1-201ENST00000623961 452 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC3.86□□□□□ -1.79
COL6A3P12111 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 AC022417.1-201ENST00000624768 1303 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 AL445529.1-201ENST00000398713 389 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 OR6K4P-201ENST00000423179 955 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 RANP8-201ENST00000444720 713 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.86□□□□□ -1.79
COL6A3P12111 AL035404.1-201ENST00000497982 568 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL6A3P12111 AP005264.7-201ENST00000625003 745 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms