Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HMGN1P12-201ENST00000499125 195 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ENPP7P11-201ENST00000505915 627 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC025458.1-201ENST00000506046 166 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC074255.1-201ENST00000511259 501 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC010342.1-201ENST00000514047 877 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RNU6-1045P-201ENST00000516321 107 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RNU6-358P-201ENST00000516564 75 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 BNIP3P11-201ENST00000603878 563 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AP000894.4-201ENST00000610185 483 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC109454.4-201ENST00000623411 649 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC138305.3-201ENST00000624988 240 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 IFIT1P1-201ENST00000400497 1449 ntBASIC6.5□□□□□ -1.37
CCDC39Q9UFE4 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC073136.1-201ENST00000449426 2884 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC092681.1-201ENST00000297369 291 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RNA5SP273-201ENST00000362484 113 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.548-201ENST00000384656 105 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 XKRYP4-201ENST00000414395 483 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 HSPD1P12-201ENST00000429127 1069 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC005534.2-201ENST00000431047 433 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 MTND1P28-201ENST00000435623 950 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RPL12P18-201ENST00000437175 325 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL592437.1-201ENST00000443781 492 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 LINC02210-201ENST00000444561 288 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 XKRYP5-201ENST00000449659 483 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC013267.1-201ENST00000458227 267 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RPS23P2-201ENST00000463671 415 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC072039.1-201ENST00000477611 581 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RN7SL170P-201ENST00000487098 295 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC021087.2-201ENST00000504656 1203 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC114967.1-201ENST00000504890 259 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC010587.2-201ENST00000511727 448 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.667-201ENST00000516212 107 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RNA5SP438-201ENST00000516561 112 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC125611.2-201ENST00000551907 647 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 MIR4637-201ENST00000582405 84 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL161729.3-201ENST00000603533 673 ntBASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 AL133370.2-201ENST00000619934 439 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms