Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 U3.28-201ENST00000391249 210 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC007066.1-201ENST00000392902 381 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RPL11P3-201ENST00000395256 523 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 DEFB108C-201ENST00000400154 252 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP178-201ENST00000410380 128 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RN7SKP17-201ENST00000411242 351 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC002524.1-201ENST00000411687 547 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RPL17P12-201ENST00000413391 526 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ELOCP17-201ENST00000414751 326 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC004448.2-201ENST00000422360 586 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL389915.1-201ENST00000422463 466 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL590399.2-201ENST00000427536 309 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL512649.1-201ENST00000428997 581 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL365184.2-201ENST00000431139 435 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ELOCP10-201ENST00000440624 327 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC005297.1-201ENST00000444765 862 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 MTND1P27-201ENST00000451117 902 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 MEMO1P4-201ENST00000453590 386 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RPL30P9-201ENST00000465586 330 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC104109.1-201ENST00000498563 436 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC107401.1-201ENST00000503426 685 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC011411.1-201ENST00000509592 876 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 IGKV3D-34-201ENST00000522638 302 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 MRPS16P1-201ENST00000523462 412 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 PMS2P3-207ENST00000529061 717 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC136618.2-201ENST00000575091 400 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ELOCP34-201ENST00000604436 327 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AC087241.4-201ENST00000612441 480 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RN7SL787P-201ENST00000613000 284 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 AL356596.1-201ENST00000624230 379 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM39Q9HCM9 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC107081.3-201ENST00000612715 2034 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 SNRPEP3-201ENST00000338402 276 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 Y_RNA.359-201ENST00000365498 102 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP81-201ENST00000365603 331 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 RNU2-50P-201ENST00000410494 143 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 HMGB1P11-201ENST00000413899 637 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 BMS1P17-202ENST00000416720 316 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 SDCBPP2-201ENST00000424643 885 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 RPL12P16-201ENST00000431098 498 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC073909.1-201ENST00000447112 999 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AL592447.1-201ENST00000447592 540 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 MTND5P4-201ENST00000514978 288 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms