Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HLFP1-201ENST00000402375 499 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AL691449.1-201ENST00000426570 421 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 RNA5SP208-201ENST00000516156 78 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 RN7SKP5-201ENST00000517045 272 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 NPM1P6-201ENST00000521088 871 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
FOXA1P55317 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA1P55317 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.75□□□□□ -1.81
FOXA1P55317 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 AC023575.1-201ENST00000580510 358 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AC069366.1-201ENST00000583159 838 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AC087468.1-201ENST00000604365 630 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA1P55317 AL731566.2-201ENST00000618971 317 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 AC091905.1-201ENST00000624400 311 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 OR52H1-202ENST00000641796 1061 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA1P55317 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA1P55317 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA1P55317 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA1P55317 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.74□□□□□ -1.81
FOXA1P55317 NAMPTP1-201ENST00000440465 2514 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA1P55317 AC126755.2-208ENST00000327792 462 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC138969.1-213ENST00000331436 462 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC013268.2-201ENST00000420753 337 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 RPL21P109-201ENST00000422213 475 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC091390.1-201ENST00000433904 331 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA1P55317 Z74696.2-201ENST00000436514 498 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA1P55317 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA1P55317 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA1P55317 AC084198.1-201ENST00000477747 402 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA1P55317 VWA8P1-201ENST00000510889 176 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA1P55317 C1GALT1P3-201ENST00000522049 819 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA1P55317 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA1P55317 MIR3939-201ENST00000582614 106 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AL023583.1-201ENST00000607518 1143 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA1P55317 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA1P55317 AC079684.1-201ENST00000621405 437 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA1P55317 RLIMP1-201ENST00000339626 1680 ntBASIC3.74□□□□□ -1.81
FOXA1P55317 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA1P55317 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 RNA5SP502-201ENST00000362694 119 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
FOXA1P55317 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
FOXA1P55317 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 AL512430.2-201ENST00000406786 339 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 HSPE1P8-201ENST00000406997 288 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.73□□□□□ -1.81
FOXA1P55317 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 AL356095.1-201ENST00000417217 199 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.73□□□□□ -1.81
FOXA1P55317 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.73□□□□□ -1.81
FOXA1P55317 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC104849.1-201ENST00000462623 405 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 RPS4XP15-201ENST00000489210 795 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.73□□□□□ -1.81
FOXA1P55317 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.73□□□□□ -1.81
FOXA1P55317 RAC1P2-201ENST00000511164 579 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 MIR2114-201ENST00000516645 80 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.73□□□□□ -1.81
FOXA1P55317 MRPL49P2-201ENST00000521066 465 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 OR4A12P-201ENST00000530847 918 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AC025884.1-201ENST00000556034 378 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AL133457.1-201ENST00000564251 987 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AC099489.2-201ENST00000574976 260 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.73□□□□□ -1.81
FOXA1P55317 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 MIR4697-201ENST00000582977 78 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.73□□□□□ -1.81
FOXA1P55317 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.73□□□□□ -1.81
FOXA1P55317 AL445423.1-201ENST00000609941 536 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 MIR6867-201ENST00000610636 67 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms