Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.13□□□□□ -1.75
SHMT2P34897 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SHMT2P34897 AC105137.1-201ENST00000484355 562 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 RPS26P15-201ENST00000488067 348 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AC002456.2-201ENST00000509356 380 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 RNA5SP519-201ENST00000516480 119 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SHMT2P34897 AP003730.1-201ENST00000524605 285 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 OR8X1P-201ENST00000534542 869 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.13□□□□□ -1.75
SHMT2P34897 HMGB3P26-201ENST00000560051 582 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.13□□□□□ -1.75
SHMT2P34897 AC012603.1-201ENST00000606424 528 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AC023813.4-201ENST00000607580 580 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AC009032.1-201ENST00000617574 431 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 AL445567.2-201ENST00000618935 498 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 MIR6810-201ENST00000622701 70 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 RPL23AP61-201ENST00000623642 466 ntBASIC4.13□□□□□ -1.75
SHMT2P34897 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.13□□□□□ -1.75
SHMT2P34897 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SHMT2P34897 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SHMT2P34897 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
SHMT2P34897 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.13□□□□□ -1.75
SHMT2P34897 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SHMT2P34897 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 AL445437.1-201ENST00000623157 3087 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 RNA5SP513-201ENST00000364648 118 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 MIR421-201ENST00000365696 85 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AC068538.1-201ENST00000376856 336 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 SNORD66.1-201ENST00000391230 76 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 RPS23P10-201ENST00000416185 486 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.12□□□□□ -1.75
SHMT2P34897 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 BTF3P10-201ENST00000433415 495 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC022431.1-201ENST00000450941 438 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 APOOP2-201ENST00000461561 539 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC104164.2-201ENST00000496953 495 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.12□□□□□ -1.75
SHMT2P34897 MRPL49P2-201ENST00000521066 465 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 OR4V1P-201ENST00000525394 1140 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 PARP1P2-201ENST00000556806 195 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.12□□□□□ -1.75
SHMT2P34897 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.12□□□□□ -1.75
SHMT2P34897 AL161729.3-201ENST00000603533 673 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 BX322635.1-201ENST00000605804 496 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AC005021.1-201ENST00000608730 355 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 MIR8059-201ENST00000620427 81 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.12□□□□□ -1.75
SHMT2P34897 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SHMT2P34897 AC007342.7-201ENST00000624610 2337 ntBASIC4.12□□□□□ -1.75
SHMT2P34897 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
SHMT2P34897 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.12□□□□□ -1.75
SHMT2P34897 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHMT2P34897 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.11□□□□□ -1.75
SHMT2P34897 SPATA2P1-201ENST00000431223 2055 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHMT2P34897 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
SHMT2P34897 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHMT2P34897 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.11□□□□□ -1.75
SHMT2P34897 AL161909.1-201ENST00000397390 712 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 RN7SKP182-201ENST00000410772 298 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AL590806.1-201ENST00000415818 853 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 YY1P1-201ENST00000427625 668 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC022022.1-201ENST00000430304 178 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHMT2P34897 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHMT2P34897 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 PPIAP21-201ENST00000464473 501 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 RN7SL860P-201ENST00000473738 223 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.11□□□□□ -1.75
SHMT2P34897 RPS29P19-201ENST00000479709 171 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 PRELID3BP7-201ENST00000503606 469 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC025554.1-201ENST00000505641 188 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC034244.2-201ENST00000514668 858 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.11□□□□□ -1.75
SHMT2P34897 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.11□□□□□ -1.75
SHMT2P34897 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.11□□□□□ -1.75
SHMT2P34897 OR5M7P-201ENST00000526140 972 ntBASIC4.11□□□□□ -1.75
SHMT2P34897 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.11□□□□□ -1.75
SHMT2P34897 AC136624.4-201ENST00000573044 370 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 137.7 ms