Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD4P09016 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 AC093535.2-201ENST00000624769 2326 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 Y_RNA.126-201ENST00000363382 111 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 RHOT1P2-201ENST00000366423 333 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXD4P09016 ATP5F1P6-201ENST00000402768 767 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 GSTM3P2-201ENST00000412746 530 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD4P09016 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD4P09016 HMGN1P5-201ENST00000448591 263 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD4P09016 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 AC021205.1-201ENST00000468797 348 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC020898.1-201ENST00000474167 787 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 RN7SL41P-201ENST00000476144 297 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 RPL36AP41-201ENST00000493820 306 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC098799.3-201ENST00000506095 438 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD4P09016 NDUFB4P12-201ENST00000513465 390 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC034244.2-201ENST00000514668 858 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC138701.1-201ENST00000524329 714 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 NPM1P35-201ENST00000533043 868 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 KPNA2P3-201ENST00000584190 848 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD4P09016 AC005242.1-201ENST00000585658 438 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 SLC25A36P1-201ENST00000590111 465 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC006116.7-201ENST00000590141 756 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD4P09016 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 AC133794.1-201ENST00000602731 914 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC073091.2-201ENST00000603205 907 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC078899.5-201ENST00000612475 178 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AL645927.2-201ENST00000618350 349 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AC009269.6-201ENST00000621778 588 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 AP000943.4-201ENST00000622912 357 ntBASIC4.16□□□□□ -1.74
HOXD4P09016 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD4P09016 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
HOXD4P09016 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD4P09016 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD4P09016 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.15□□□□□ -1.74
HOXD4P09016 USP9YP4-201ENST00000424401 1745 ntBASIC4.15□□□□□ -1.74
HOXD4P09016 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.15□□□□□ -1.74
HOXD4P09016 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD4P09016 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
HOXD4P09016 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
HOXD4P09016 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 RNU6-984P-201ENST00000363236 109 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 RNU1-83P-201ENST00000363426 164 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AL034374.1-201ENST00000406329 351 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 RAC1P3-201ENST00000416129 580 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD4P09016 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD4P09016 AL356387.2-201ENST00000422272 243 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD4P09016 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 YWHAZP2-201ENST00000440317 728 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 PTMAP3-201ENST00000447474 330 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 AL451050.1-201ENST00000450126 415 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD4P09016 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC011276.1-201ENST00000469688 323 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC109327.1-201ENST00000471666 403 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC093801.2-201ENST00000503966 1050 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC025674.1-201ENST00000507074 324 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC007016.1-201ENST00000512110 244 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD4P09016 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms