Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.78■□□□□ 0.76
TTC28Q96AY4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.78■□□□□ 0.76
TTC28Q96AY4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TTC28Q96AY4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TTC28Q96AY4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TTC28Q96AY4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TTC28Q96AY4 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 YBX2P1-201ENST00000394192 760 ntBASIC19.77■□□□□ 0.76
TTC28Q96AY4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TTC28Q96AY4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.77■□□□□ 0.76
TTC28Q96AY4 AC080038.3-201ENST00000623346 1952 ntBASIC19.77■□□□□ 0.76
TTC28Q96AY4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TTC28Q96AY4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
TTC28Q96AY4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.77■□□□□ 0.75
TTC28Q96AY4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.77■□□□□ 0.75
TTC28Q96AY4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC211486.1-202ENST00000416371 468 ntBASIC19.76■□□□□ 0.75
TTC28Q96AY4 SCARNA2-201ENST00000458748 420 ntBASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC211476.1-201ENST00000503899 468 ntBASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC145285.3-201ENST00000564603 959 ntBASIC19.76■□□□□ 0.75
TTC28Q96AY4 AL356488.2-201ENST00000602755 427 ntBASIC19.76■□□□□ 0.75
TTC28Q96AY4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TTC28Q96AY4 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.76■□□□□ 0.75
TTC28Q96AY4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 KRT8P41-201ENST00000533985 1514 ntBASIC19.75■□□□□ 0.75
TTC28Q96AY4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TTC28Q96AY4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.75■□□□□ 0.75
TTC28Q96AY4 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TTC28Q96AY4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 METTL21AP1-201ENST00000438852 635 ntBASIC19.74■□□□□ 0.75
TTC28Q96AY4 DNAJB3-201ENST00000446806 729 ntBASIC19.74■□□□□ 0.75
TTC28Q96AY4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 AC093909.1-201ENST00000504731 1122 ntBASIC19.74■□□□□ 0.75
TTC28Q96AY4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.74■□□□□ 0.75
TTC28Q96AY4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.73■□□□□ 0.75
TTC28Q96AY4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TTC28Q96AY4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.73■□□□□ 0.75
TTC28Q96AY4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TTC28Q96AY4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.73■□□□□ 0.75
TTC28Q96AY4 MIR7706-201ENST00000613747 67 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms