Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Gm11355-201ENSMUST00000121120 306 ntBASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3bQ3ULL6 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Gm44450-201ENSMUST00000199528 114 ntBASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3bQ3ULL6 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.73■□□□□ 0.43
Upf3bQ3ULL6 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Gm6659-201ENSMUST00000174752 547 ntBASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Upf3bQ3ULL6 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Gm37722-201ENSMUST00000193757 208 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms