Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Rfx1P48377 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.88■□□□□ 0.77
Rfx1P48377 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.88■□□□□ 0.77
Rfx1P48377 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Rfx1P48377 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Rfx1P48377 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rfx1P48377 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Rfx1P48377 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Rfx1P48377 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Rfx1P48377 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rfx1P48377 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.85■□□□□ 0.77
Rfx1P48377 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Rfx1P48377 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Rfx1P48377 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rfx1P48377 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC19.85■□□□□ 0.77
Rfx1P48377 AC133083.1-201ENSMUST00000221736 2209 ntBASIC19.84■□□□□ 0.77
Rfx1P48377 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Rfx1P48377 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.84■□□□□ 0.77
Rfx1P48377 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Rfx1P48377 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rfx1P48377 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rfx1P48377 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rfx1P48377 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rfx1P48377 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rfx1P48377 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.83■□□□□ 0.77
Rfx1P48377 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Rfx1P48377 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.83■□□□□ 0.77
Rfx1P48377 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rfx1P48377 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.83■□□□□ 0.77
Rfx1P48377 Gm43183-201ENSMUST00000200632 547 ntBASIC19.83■□□□□ 0.77
Rfx1P48377 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Rfx1P48377 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
Rfx1P48377 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rfx1P48377 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms