Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC109471.1-201ENST00000511631 612 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 MTND5P13-201ENST00000513046 1079 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC006427.1-201ENST00000514359 712 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 HNRNPKP5-201ENST00000515300 253 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 RN7SKP283-201ENST00000517197 270 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC022360.1-201ENST00000521058 340 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 COX6B1P6-201ENST00000522347 255 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 GTF2IP8-201ENST00000560687 584 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 OR4K7P-201ENST00000580232 945 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC025857.2-201ENST00000602711 238 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL360012.1-201ENST00000602813 131 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC104785.1-201ENST00000603220 588 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC103881.1-201ENST00000603476 538 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC008814.1-201ENST00000603797 406 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC090425.2-201ENST00000608818 501 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC090116.1-201ENST00000615679 446 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 Z69908.1-201ENST00000622603 247 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AP003072.4-201ENST00000624580 310 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC007494.3-201ENST00000624660 743 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC005618.4-201ENST00000625053 554 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC087359.1-201ENST00000508335 1740 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL034549.2-201ENST00000618285 3373 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC006484.1-201ENST00000435086 1884 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC004656.1-201ENST00000568479 4951 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 Y_RNA.77-201ENST00000362962 107 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 RN7SKP216-201ENST00000411050 312 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL022400.1-201ENST00000423946 935 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL589823.1-201ENST00000429577 183 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC124944.2-201ENST00000429866 1242 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 FABP7P2-201ENST00000429946 379 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC098826.1-201ENST00000433943 471 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL049745.1-201ENST00000433953 286 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC009961.3-201ENST00000449832 765 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC005229.2-201ENST00000456995 399 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 MTND1P16-201ENST00000465177 898 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 RPL30P6-201ENST00000475925 342 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 ACTG1P13-201ENST00000486987 1043 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC080014.1-201ENST00000496877 1201 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC147055.4-201ENST00000504399 745 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 HSPE1P23-201ENST00000509838 286 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 MTND4LP31-201ENST00000514859 294 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 HMGN1P9-201ENST00000515212 298 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC136777.2-201ENST00000522979 358 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC004217.3-201ENST00000551552 878 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 EDDM3DP-201ENST00000554692 434 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL390838.2-201ENST00000602394 274 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AL390816.3-201ENST00000604527 1066 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 HULC.1-201ENST00000612720 240 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC091953.3-201ENST00000623220 236 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 FP325313.1-201ENST00000638228 703 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms