Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 CYP1D1P-201ENST00000416662 1433 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 XPOTP1-201ENST00000443317 2398 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 OR9K1P-202ENST00000641111 3217 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 FGF7P2-201ENST00000332473 296 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP435-201ENST00000364044 108 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP122-201ENST00000384457 108 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SNORA17A-201ENST00000391185 133 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 OR2AT2P-201ENST00000413438 905 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 RPS7P13-201ENST00000413955 498 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL662874.1-201ENST00000426065 230 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SUMO2P3-201ENST00000438311 288 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 USP9YP29-201ENST00000445112 563 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SETP20-201ENST00000457046 852 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SRRM1P2-201ENST00000464531 1192 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 RN7SL273P-201ENST00000481561 299 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 MTCYBP17-201ENST00000503579 789 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC026412.2-201ENST00000512270 1075 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SNORA43.3-201ENST00000517240 103 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 MTND1P5-201ENST00000517906 940 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 OR4A12P-201ENST00000530847 918 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC090502.2-201ENST00000549267 280 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 CYCSP2-201ENST00000558168 301 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 KPNA2P3-201ENST00000584190 848 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC104785.1-201ENST00000603220 588 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC073648.5-201ENST00000603502 305 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC126175.1-201ENST00000617041 758 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AL049536.1-201ENST00000625043 744 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SNORA17.5-201ENST00000630429 132 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 PABPC1P9-201ENST00000426076 1612 ntBASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM39Q9HCM9 AC135352.1-201ENST00000506173 1418 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP46-201ENST00000362370 120 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 SNORA64.1-201ENST00000362600 132 ntBASIC5.65□□□□□ -1.5
TRIM39Q9HCM9 RNU6-1215P-201ENST00000384441 102 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms