Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TAF9BP2-201ENST00000400856 499 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AL691447.1-201ENST00000419456 387 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC245028.1-201ENST00000423259 256 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 FAR2P4-202ENST00000425399 584 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 ZNF965P-201ENST00000432501 817 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 HMGB1P48-201ENST00000446155 598 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 TRBV8-2-201ENST00000475637 270 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 RN7SL319P-201ENST00000480656 221 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 RPL5P23-201ENST00000496040 868 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 MYL12AP1-201ENST00000518490 515 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 IGKV1-32-201ENST00000519290 311 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 HAUS1P3-201ENST00000523909 662 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 OR8L1P-201ENST00000534005 955 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 BGLT3-201ENST00000564523 994 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC090312.2-201ENST00000582687 378 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC008759.1-201ENST00000589783 983 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AP001521.2-201ENST00000608772 546 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AL022401.1-201ENST00000619498 108 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC138649.5-201ENST00000637456 137 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 AC012618.3-205ENST00000637896 1496 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AL160275.2-201ENST00000412010 394 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 CHEK2P3-201ENST00000416118 248 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 RPS17P8-201ENST00000434525 335 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 RPS7P5-201ENST00000441482 581 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AL137845.2-201ENST00000444292 988 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC104689.1-201ENST00000473356 768 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 PPBPP1-201ENST00000510807 373 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 RN7SKP283-201ENST00000517197 270 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 OR6C73P-201ENST00000546432 358 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC093249.4-201ENST00000564755 259 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 MTATP6P25-201ENST00000574491 261 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AL121932.1-201ENST00000605542 214 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC010424.2-201ENST00000607594 443 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC091953.3-201ENST00000623220 236 ntBASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ZNF540Q8NDQ6 AC027290.2-201ENST00000623210 18662 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 MIR448-201ENST00000362131 111 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 GCNT6-201ENST00000379591 934 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 318.8 ms