Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC2.74□□□□□ -1.97
PRKDCP78527 RAB28P3-201ENST00000448325 597 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC2.74□□□□□ -1.97
PRKDCP78527 MIR5186-201ENST00000577504 120 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC009303.3-201ENST00000591103 736 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 NAMPTP1-201ENST00000440465 2514 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 DNAJA1P1-201ENST00000425106 1187 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC091862.1-201ENST00000438016 1100 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 VN1R104P-201ENST00000505115 1009 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC022695.1-201ENST00000522089 237 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC025627.2-201ENST00000576220 160 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC026368.1-201ENST00000614934 690 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC138907.10-201ENST00000623708 983 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 AC010266.2-201ENST00000564741 3255 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 AC024341.1-201ENST00000526444 1552 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 ZNF807-201ENST00000328088 1707 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 LYST-202ENST00000389794 12985 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 RNU4-82P-201ENST00000362443 140 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 RN7SKP222-201ENST00000410651 315 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 COTL1P1-201ENST00000422309 375 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 RPS26P4-201ENST00000431743 355 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC2.73□□□□□ -1.97
PRKDCP78527 RPL5P12-201ENST00000477071 851 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 DEFB109A-201ENST00000482450 265 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 Y_RNA.676-201ENST00000516393 96 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.73□□□□□ -1.97
PRKDCP78527 AC005520.3-201ENST00000602874 370 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC2.73□□□□□ -1.97
PRKDCP78527 RNA5SP116-201ENST00000516132 98 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 AC135001.1-201ENST00000544546 283 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AC007066.2-202ENST00000566531 914 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 SAMMSON-213ENST00000641336 1521 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 BX323014.1-201ENST00000412876 237 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.73□□□□□ -1.97
PRKDCP78527 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 RPS4XP18-201ENST00000495480 763 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 RNA5SP303-201ENST00000516192 130 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC2.73□□□□□ -1.97
PRKDCP78527 AC112503.1-201ENST00000608436 391 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 AC022106.2-201ENST00000620114 757 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 AL392088.2-201ENST00000637607 285 ntBASIC2.73□□□□□ -1.97
PRKDCP78527 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PRKDCP78527 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC2.73□□□□□ -1.97
PRKDCP78527 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC2.72□□□□□ -1.97
PRKDCP78527 AC084198.1-201ENST00000477747 402 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 RPL32P34-201ENST00000486380 400 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 MIR4472-2-201ENST00000582069 67 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC103881.1-201ENST00000603476 538 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 TTC3P1-201ENST00000399586 6081 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 NACAP7-201ENST00000407371 609 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AL121878.1-201ENST00000418638 859 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms