Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 AC007529.1-201ENST00000418574 2178 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A3P25940 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL5A3P25940 AL035423.1-201ENST00000420331 213 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AC005300.1-201ENST00000428401 373 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 BX510359.1-201ENST00000456973 237 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 RPL21P11-201ENST00000461458 483 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.81□□□□□ -1.64
COL5A3P25940 SNORA70.17-201ENST00000516449 133 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 OR7E13P-201ENST00000526052 910 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AC008011.1-201ENST00000545989 227 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.81□□□□□ -1.64
COL5A3P25940 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 AL773545.4-201ENST00000637262 310 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AC244258.1-201ENST00000637553 1071 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 AL513478.4-201ENST00000641636 310 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 Z82217.1-201ENST00000625157 8149 ntBASIC4.81□□□□□ -1.64
COL5A3P25940 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A3P25940 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A3P25940 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL5A3P25940 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL5A3P25940 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.8□□□□□ -1.64
COL5A3P25940 SETP9-201ENST00000423837 832 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A3P25940 AC084198.1-201ENST00000477747 402 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A3P25940 AC026979.4-201ENST00000606555 645 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A3P25940 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A3P25940 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL5A3P25940 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A3P25940 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.8□□□□□ -1.64
COL5A3P25940 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.8□□□□□ -1.64
COL5A3P25940 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 ZNF833P-201ENST00000424938 1494 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
COL5A3P25940 AC117434.1-201ENST00000419971 836 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AL158156.1-201ENST00000422509 473 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 MIR3936-201ENST00000584304 110 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AC068020.1-201ENST00000594215 661 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AC012493.2-201ENST00000595083 291 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 AL591424.2-201ENST00000617023 128 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 MIR7154-201ENST00000620673 73 ntBASIC4.8□□□□□ -1.64
COL5A3P25940 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.8□□□□□ -1.64
COL5A3P25940 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A3P25940 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A3P25940 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A3P25940 U3.23-201ENST00000391132 200 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 RPL7AP73-201ENST00000413490 353 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 PDSS1P1-201ENST00000422953 1114 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 ATP5JP1-201ENST00000431631 322 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A3P25940 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A3P25940 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A3P25940 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.79□□□□□ -1.64
COL5A3P25940 AC106782.4-201ENST00000568264 210 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A3P25940 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A3P25940 AL157762.1-201ENST00000619612 415 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 AP001002.2-201ENST00000625137 386 ntBASIC4.79□□□□□ -1.64
COL5A3P25940 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A3P25940 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A3P25940 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A3P25940 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL5A3P25940 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A3P25940 AL590609.2-201ENST00000421430 368 ntBASIC4.78□□□□□ -1.64
COL5A3P25940 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms