Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL442128.2-201ENST00000620246 1824 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 MIR490-201ENST00000384865 128 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 SSR1P1-201ENST00000407630 814 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL158156.1-201ENST00000422509 473 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL391219.1-201ENST00000422570 483 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL133162.1-201ENST00000463228 453 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC025554.1-201ENST00000505641 188 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 RPL7L1P13-201ENST00000511702 739 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 OR5M7P-201ENST00000526140 972 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 LSM3P2-201ENST00000551246 273 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 RPL23AP87-202ENST00000573039 466 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC079880.2-201ENST00000603790 1213 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL137849.1-201ENST00000604767 169 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL451044.1-201ENST00000604867 238 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC138907.10-201ENST00000623708 983 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 AC092111.2-201ENST00000611627 1414 ntBASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SHANK3Q9BYB0 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AL359643.1-201ENST00000404109 423 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 RPS3AP46-201ENST00000448352 682 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC097505.1-201ENST00000610199 565 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 MIR199A2-201ENST00000385289 110 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AL031584.1-201ENST00000447169 754 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC108022.1-201ENST00000493466 478 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC012417.1-201ENST00000582307 1039 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 MIR5187-201ENST00000583479 76 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC005972.3-201ENST00000606304 481 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AL157762.1-201ENST00000619612 415 ntBASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
SHANK3Q9BYB0 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AL139095.1-201ENST00000404326 391 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 RBMY1KP-201ENST00000423480 476 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 MTCO1P45-201ENST00000431457 267 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 RPS4XP10-201ENST00000465034 731 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 RN7SL601P-201ENST00000471221 293 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AC106707.2-201ENST00000484182 374 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AC069306.1-201ENST00000507006 843 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 AP004289.2-201ENST00000444413 1457 ntBASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHANK3Q9BYB0 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms