Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 MTATP6P31-201ENST00000406985 692 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 RN7SKP216-201ENST00000411050 312 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TBCAP2-201ENST00000416175 326 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 NUP35P2-201ENST00000416748 943 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 RPL7P53-201ENST00000421245 739 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 OR7E125P-201ENST00000443450 846 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 H2AFZP6-201ENST00000444403 394 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 RPL29P29-201ENST00000448725 423 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TRY2P-201ENST00000448860 689 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TVP23BP2-201ENST00000455082 615 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC007686.1-201ENST00000488511 463 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 PTGES3P3-201ENST00000511479 482 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC023141.12-201ENST00000512399 199 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC004923.2-201ENST00000529649 369 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 RFPL1S-203ENST00000539579 330 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC008033.2-201ENST00000542626 177 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AL049839.1-201ENST00000556151 657 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC027176.2-201ENST00000559166 746 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 NTAN1P1-201ENST00000603150 646 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC105254.2-201ENST00000603636 436 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC011374.2-201ENST00000607135 526 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 FAM25E-202ENST00000608562 189 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC023509.5-201ENST00000617434 807 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC006065.5-201ENST00000623427 349 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 XPOTP1-201ENST00000443317 2398 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SDAD1P1-202ENST00000524156 2051 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC017007.4-201ENST00000503353 1352 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RNU6-40P-201ENST00000384254 107 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RNU2-17P-201ENST00000410290 190 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RNA5SP345-201ENST00000410646 108 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 VTA1P1-201ENST00000414044 866 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RPL37P6-202ENST00000464216 403 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RPL37AP8-201ENST00000494116 276 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RNA5SP309-201ENST00000516670 106 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 CBX3P5-201ENST00000552017 521 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 RPL7P50-201ENST00000600588 727 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC005191.1-201ENST00000603950 358 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC008966.2-201ENST00000606157 453 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 MIR6748-201ENST00000610433 71 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL121873.1-201ENST00000616013 524 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC104820.1-201ENST00000624183 307 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL356121.2-201ENST00000624715 780 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 FAM157B-203ENST00000639350 358 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AL355852.1-201ENST00000454081 1771 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 MARK2P15-201ENST00000432204 2186 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC106871.1-201ENST00000568324 3102 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 AC011978.2-201ENST00000569835 2054 ntBASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ZNF540Q8NDQ6 MTND5P3-201ENST00000438536 1800 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 Z98755.1-201ENST00000407015 1384 ntBASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
ZNF540Q8NDQ6 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms