Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC090877.1-201ENST00000561418 344 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA1P55317 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA1P55317 AF230666.2-201ENST00000602328 725 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC009704.2-201ENST00000618739 483 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC105105.5-201ENST00000622635 1294 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.8□□□□□ -1.8
FOXA1P55317 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA1P55317 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA1P55317 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA1P55317 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 NCAPGP1-201ENST00000505112 1814 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 AC107027.3-201ENST00000565095 3473 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 RNA5SP130-201ENST00000364431 114 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 GCNT6-201ENST00000379591 934 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 MIR708-201ENST00000390708 88 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 HMGN2P8-201ENST00000391458 268 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 AC115285.1-201ENST00000424879 736 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA1P55317 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA1P55317 MRPL50P1-201ENST00000431951 384 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 HMGB1P16-201ENST00000447155 540 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA1P55317 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA1P55317 RNA5SP179-201ENST00000517284 121 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 PDCD5P1-201ENST00000543528 309 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 AC018552.1-201ENST00000562099 811 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.79□□□□□ -1.8
FOXA1P55317 SNX6P1-201ENST00000601728 1224 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 AC091167.4-201ENST00000605079 184 ntBASIC3.79□□□□□ -1.8
FOXA1P55317 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA1P55317 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA1P55317 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
FOXA1P55317 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC083899.2-201ENST00000423285 1376 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 CASC19-255ENST00000641733 1385 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA1P55317 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA1P55317 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 RNU1-32P-201ENST00000363937 159 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 ADIG-201ENST00000373348 430 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA1P55317 OR6C69P-201ENST00000394268 893 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 ATP5F1P4-201ENST00000397288 746 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 FABP12P1-201ENST00000401911 322 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AC108032.1-201ENST00000416706 207 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXA1P55317 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 RPL21P133-201ENST00000443666 476 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 MTND6P5-201ENST00000448266 512 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 NUTF2P3-201ENST00000448540 384 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA1P55317 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA1P55317 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC091516.1-201ENST00000549191 703 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 BRDTP1-201ENST00000605735 677 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AC007390.2-201ENST00000606229 3803 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 MIR378J-201ENST00000611988 109 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AL023881.1-201ENST00000621088 301 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC073530.2-201ENST00000623987 261 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AC067931.1-201ENST00000624190 671 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 MIR7641-1-201ENST00000627518 61 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms