Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CXCL12P48061 Z82217.1-201ENST00000625157 8149 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 MIR491-201ENST00000384877 84 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.1□□□□□ -1.75
CXCL12P48061 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.1□□□□□ -1.75
CXCL12P48061 NPM1P34-201ENST00000428821 893 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 AC092691.2-201ENST00000461787 803 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 OR9N1P-201ENST00000491296 333 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.1□□□□□ -1.75
CXCL12P48061 SNORA70.24-201ENST00000517233 118 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.1□□□□□ -1.75
CXCL12P48061 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 AL391497.1-201ENST00000608671 547 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AL159169.3-201ENST00000608871 561 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AL121890.2-201ENST00000617644 465 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.1□□□□□ -1.75
CXCL12P48061 FP236240.3-201ENST00000623061 327 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.1□□□□□ -1.75
CXCL12P48061 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 AC233968.1-201ENST00000611212 1300 ntBASIC4.1□□□□□ -1.75
CXCL12P48061 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CXCL12P48061 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.1□□□□□ -1.75
CXCL12P48061 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CXCL12P48061 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
CXCL12P48061 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CXCL12P48061 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.09□□□□□ -1.75
CXCL12P48061 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.09□□□□□ -1.75
CXCL12P48061 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.75
CXCL12P48061 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CXCL12P48061 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CXCL12P48061 SNORA5A-201ENST00000384111 134 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 RPS26P4-201ENST00000431743 355 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 TMX2P1-201ENST00000436507 708 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 TBCAP1-201ENST00000436520 327 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.09□□□□□ -1.75
CXCL12P48061 RPS6P2-201ENST00000454208 705 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC022336.1-201ENST00000475510 337 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.09□□□□□ -1.75
CXCL12P48061 RPS3AP6-201ENST00000484430 795 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 RPL29P14-201ENST00000495837 428 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.75
CXCL12P48061 BNIP3P41-201ENST00000503774 571 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC093853.1-201ENST00000515689 483 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 KCTD9P6-201ENST00000522306 950 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC008126.1-201ENST00000549019 480 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.09□□□□□ -1.75
CXCL12P48061 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.09□□□□□ -1.75
CXCL12P48061 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.09□□□□□ -1.75
CXCL12P48061 AC025627.2-201ENST00000576220 160 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 MIR5684-201ENST00000585074 65 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC124856.1-201ENST00000600819 896 ntBASIC4.09□□□□□ -1.75
CXCL12P48061 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.09□□□□□ -1.75
CXCL12P48061 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
CXCL12P48061 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CXCL12P48061 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CXCL12P48061 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CXCL12P48061 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CXCL12P48061 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CXCL12P48061 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CXCL12P48061 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CXCL12P48061 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.08□□□□□ -1.76
CXCL12P48061 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.08□□□□□ -1.76
CXCL12P48061 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.08□□□□□ -1.76
CXCL12P48061 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CXCL12P48061 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CXCL12P48061 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CXCL12P48061 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.08□□□□□ -1.76
CXCL12P48061 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CXCL12P48061 THAP12P5-201ENST00000405864 2275 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 SNORA11.2-201ENST00000408318 127 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 SNORA3.3-201ENST00000408712 125 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 AC068533.1-201ENST00000418542 415 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 OR2AH1P-201ENST00000425717 928 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CXCL12P48061 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.08□□□□□ -1.76
CXCL12P48061 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.08□□□□□ -1.76
CXCL12P48061 MTCO3P17-201ENST00000443775 513 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.08□□□□□ -1.76
CXCL12P48061 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.08□□□□□ -1.76
CXCL12P48061 TPT1P1-201ENST00000458495 518 ntBASIC4.08□□□□□ -1.76
CXCL12P48061 RPL23AP37-201ENST00000479658 549 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms