Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ELOCP35-201ENST00000604289 336 ntBASIC6.49□□□□□ -1.37
CUX1P39880 AC243312.2-201ENST00000623340 601 ntBASIC6.49□□□□□ -1.37
CUX1P39880 AL392088.2-201ENST00000637607 285 ntBASIC6.49□□□□□ -1.37
CUX1P39880 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 AC083899.2-201ENST00000423285 1376 ntBASIC6.48□□□□□ -1.37
CUX1P39880 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
CUX1P39880 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
CUX1P39880 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.48□□□□□ -1.37
CUX1P39880 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC6.48□□□□□ -1.37
CUX1P39880 RANP8-201ENST00000444720 713 ntBASIC6.48□□□□□ -1.37
CUX1P39880 AC106782.4-201ENST00000568264 210 ntBASIC6.48□□□□□ -1.37
CUX1P39880 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC6.48□□□□□ -1.37
CUX1P39880 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.48□□□□□ -1.37
CUX1P39880 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC6.48□□□□□ -1.37
CUX1P39880 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CUX1P39880 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
CUX1P39880 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CUX1P39880 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
CUX1P39880 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.47□□□□□ -1.37
CUX1P39880 AL121878.1-201ENST00000418638 859 ntBASIC6.47□□□□□ -1.37
CUX1P39880 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.47□□□□□ -1.37
CUX1P39880 IGLV3-26-201ENST00000520756 302 ntBASIC6.47□□□□□ -1.37
CUX1P39880 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC6.47□□□□□ -1.37
CUX1P39880 RPL21P7-201ENST00000557463 483 ntBASIC6.47□□□□□ -1.37
CUX1P39880 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CUX1P39880 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CUX1P39880 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CUX1P39880 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CUX1P39880 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CUX1P39880 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CUX1P39880 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
CUX1P39880 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.37
CUX1P39880 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
CUX1P39880 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC6.46□□□□□ -1.37
CUX1P39880 RPS7P15-201ENST00000415804 584 ntBASIC6.46□□□□□ -1.37
CUX1P39880 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC6.46□□□□□ -1.37
CUX1P39880 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC6.46□□□□□ -1.37
CUX1P39880 RAC1P2-201ENST00000511164 579 ntBASIC6.46□□□□□ -1.37
CUX1P39880 STX3-204ENST00000530221 534 ntTSL 5 BASIC6.46□□□□□ -1.37
CUX1P39880 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.46□□□□□ -1.37
CUX1P39880 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC6.46□□□□□ -1.37
CUX1P39880 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC6.46□□□□□ -1.37
CUX1P39880 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC6.46□□□□□ -1.37
CUX1P39880 AC005000.2-201ENST00000605468 310 ntBASIC6.46□□□□□ -1.37
CUX1P39880 MESTIT1_2.1-201ENST00000616328 235 ntBASIC6.46□□□□□ -1.37
CUX1P39880 AP001002.2-201ENST00000625137 386 ntBASIC6.46□□□□□ -1.37
CUX1P39880 PCNP-208ENST00000627393 136 ntTSL 2 BASIC6.46□□□□□ -1.37
CUX1P39880 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CUX1P39880 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
CUX1P39880 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
CUX1P39880 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
CUX1P39880 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC6.46□□□□□ -1.38
CUX1P39880 RNU1-15P-201ENST00000353977 144 ntBASIC6.45□□□□□ -1.38
CUX1P39880 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC6.45□□□□□ -1.38
CUX1P39880 BX510359.1-201ENST00000456973 237 ntBASIC6.45□□□□□ -1.38
CUX1P39880 MORF4L2P1-201ENST00000503761 858 ntBASIC6.45□□□□□ -1.38
CUX1P39880 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC6.45□□□□□ -1.38
CUX1P39880 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CUX1P39880 AC107016.1-201ENST00000550463 337 ntBASIC6.45□□□□□ -1.38
CUX1P39880 MIR3936-201ENST00000584304 110 ntBASIC6.45□□□□□ -1.38
CUX1P39880 SMCR2_2.1-201ENST00000619783 161 ntBASIC6.45□□□□□ -1.38
CUX1P39880 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
CUX1P39880 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.45□□□□□ -1.38
CUX1P39880 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CUX1P39880 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC6.45□□□□□ -1.38
CUX1P39880 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CUX1P39880 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC6.45□□□□□ -1.38
CUX1P39880 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC6.45□□□□□ -1.38
CUX1P39880 RNU1-33P-201ENST00000364249 162 ntBASIC6.45□□□□□ -1.38
CUX1P39880 MIR634-201ENST00000385208 97 ntBASIC6.45□□□□□ -1.38
CUX1P39880 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC6.45□□□□□ -1.38
CUX1P39880 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.45□□□□□ -1.38
CUX1P39880 TPT1P1-201ENST00000458495 518 ntBASIC6.45□□□□□ -1.38
CUX1P39880 RPS4XP12-201ENST00000461747 709 ntBASIC6.45□□□□□ -1.38
CUX1P39880 AC025554.1-201ENST00000505641 188 ntBASIC6.45□□□□□ -1.38
CUX1P39880 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.45□□□□□ -1.38
CUX1P39880 AC022695.1-201ENST00000522089 237 ntBASIC6.45□□□□□ -1.38
CUX1P39880 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC6.45□□□□□ -1.38
CUX1P39880 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
CUX1P39880 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC6.44□□□□□ -1.38
CUX1P39880 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.44□□□□□ -1.38
CUX1P39880 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC6.44□□□□□ -1.38
CUX1P39880 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
CUX1P39880 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
CUX1P39880 AC008079.2-201ENST00000623543 20396 ntBASIC6.44□□□□□ -1.38
CUX1P39880 HSFY1P1-201ENST00000423928 1178 ntBASIC6.44□□□□□ -1.38
CUX1P39880 RNA5SP208-201ENST00000516156 78 ntBASIC6.44□□□□□ -1.38
CUX1P39880 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC6.44□□□□□ -1.38
CUX1P39880 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.44□□□□□ -1.38
CUX1P39880 CSNK1A1P1-202ENST00000563423 981 ntBASIC6.44□□□□□ -1.38
CUX1P39880 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms