Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.61□□□□□ -1.35
PCDHGA11Q9Y5H2 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC107081.3-201ENST00000612715 2034 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC022905.1-201ENST00000503430 3048 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL033543.1-201ENST00000623440 13454 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC005618.1-201ENST00000606901 3148 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RNU6-28P-201ENST00000362378 107 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RNY4P16-201ENST00000364768 94 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 SNORD42.2-201ENST00000365570 69 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RNU6-1148P-201ENST00000410992 104 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RNU2-22P-201ENST00000411266 212 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL662791.3-201ENST00000413771 776 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL645937.1-202ENST00000421799 937 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 LYPLA1P1-201ENST00000434514 622 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 CRYGGP-201ENST00000443337 145 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC114755.1-201ENST00000453101 868 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL133244.1-201ENST00000456007 258 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 HMGN2P26-201ENST00000463169 339 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC083806.1-201ENST00000468934 316 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 TUBBP11-201ENST00000472255 252 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RN7SL654P-201ENST00000479178 292 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RAD51AP1P1-201ENST00000484195 1001 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC025271.1-201ENST00000485045 429 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC105417.1-201ENST00000514691 285 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 RNU6-1220P-201ENST00000517126 108 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 HNRNPCP8-201ENST00000528764 888 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 SSU72P6-201ENST00000532644 488 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 CYCSP28-201ENST00000534284 321 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL845552.1-201ENST00000556820 323 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 NCAPGP2-201ENST00000557911 754 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC011193.2-201ENST00000582638 367 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC024085.1-201ENST00000604299 432 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC243654.2-201ENST00000612843 443 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC008626.2-201ENST00000624425 248 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 OR2L1P-202ENST00000641567 1023 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AC007485.2-201ENST00000623493 1667 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.6□□□□□ -1.35
PCDHGA11Q9Y5H2 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.59□□□□□ -1.35
PCDHGA11Q9Y5H2 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
PCDHGA11Q9Y5H2 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
PCDHGA11Q9Y5H2 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
PCDHGA11Q9Y5H2 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
PCDHGA11Q9Y5H2 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms