Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 COX6B1P3-201ENST00000312310 260 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 SNORA51.4-201ENST00000364993 124 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC097374.1-203ENST00000400783 485 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 MRPL32P1-201ENST00000406301 247 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CYCSP6-201ENST00000434498 302 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CBX1P4-201ENST00000439415 457 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 RPL23AP93-201ENST00000440847 484 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC011037.1-201ENST00000483964 558 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 FCF1P3-201ENST00000496394 590 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 LSM3P4-201ENST00000502948 309 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC105391.1-201ENST00000503155 1045 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 ATG10-AS1-201ENST00000504846 648 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 MTND4LP22-201ENST00000508209 276 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC134698.1-201ENST00000511619 643 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 SOX5P1-201ENST00000524155 1127 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 OR4A46P-201ENST00000527255 933 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC126177.5-201ENST00000549599 178 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC012157.1-201ENST00000549725 501 ntTSL 4 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 ABI1P1-201ENST00000603375 1120 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC115621.1-201ENST00000604653 858 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL096803.3-201ENST00000609032 532 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC019193.2-201ENST00000610012 634 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL589935.2-201ENST00000616471 1231 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC009318.3-201ENST00000616916 503 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AC124312.6-202ENST00000623624 418 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 DLST-216ENST00000626051 252 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CGA-206ENST00000630630 832 ntTSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 5S_rRNA.28-201ENST00000638107 119 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 RFC1-217ENST00000639695 867 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL355578.1-201ENST00000607405 1328 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 XPOTP1-201ENST00000443317 2398 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC2.4□□□□□ -2.02
LINC00643Q86TS7 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.4□□□□□ -2.02
LINC00643Q86TS7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
LINC00643Q86TS7 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
LINC00643Q86TS7 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 MIR887-201ENST00000401258 79 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 HSPE1P26-201ENST00000405341 275 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 GRPEL2P2-201ENST00000421856 670 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC073069.1-201ENST00000428657 441 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC244505.4-201ENST00000434905 287 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 CNOT7P2-201ENST00000441051 832 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 TRIM60P18-201ENST00000441518 828 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 SSXP5-201ENST00000443473 287 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC092601.1-201ENST00000444526 383 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 RANP1-206ENST00000455094 651 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 HMGN1P18-201ENST00000457642 277 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 SNORD108-201ENST00000459332 71 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC109462.1-201ENST00000491087 368 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC093663.1-201ENST00000497190 394 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC138866.2-201ENST00000508650 584 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC245166.1-201ENST00000521012 253 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC013701.1-201ENST00000522657 465 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC109635.6-201ENST00000525487 1113 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC011468.4-201ENST00000603942 409 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC091488.1-201ENST00000604239 660 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms