Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC6.05□□□□□ -1.44
COL8A1P27658 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.05□□□□□ -1.44
COL8A1P27658 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.05□□□□□ -1.44
COL8A1P27658 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 RPL23AP57-201ENST00000332361 466 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 RPL32P3-201ENST00000359025 275 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RNU6-582P-201ENST00000362989 107 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 U3.12-201ENST00000364498 214 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RNU6-1055P-201ENST00000391085 107 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 Y_RNA.645-201ENST00000391229 102 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC004386.1-201ENST00000393214 761 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AL359715.1-201ENST00000404330 555 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AL590635.1-201ENST00000406314 586 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RN7SKP254-201ENST00000410685 310 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 GEMIN2P2-201ENST00000418195 715 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AL590609.2-201ENST00000421430 368 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RPL21P91-201ENST00000429231 479 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RPS17P8-201ENST00000434525 335 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC092106.2-201ENST00000436597 487 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 PCBP2P1-201ENST00000437262 977 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC073109.1-201ENST00000445066 978 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC6.05□□□□□ -1.44
COL8A1P27658 PRPF38AP1-201ENST00000451976 933 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC6.05□□□□□ -1.44
COL8A1P27658 SNORA81.1-201ENST00000458922 177 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RN7SL39P-201ENST00000462264 297 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 GMFBP1-201ENST00000467831 427 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 RPL21P99-201ENST00000480369 423 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC091965.3-201ENST00000506236 208 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC006499.2-201ENST00000513470 337 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 RNU6-1088P-201ENST00000516850 104 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC6.05□□□□□ -1.44
COL8A1P27658 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 OR4P1P-201ENST00000530808 1136 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 MIR3128-201ENST00000581957 66 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC090312.2-201ENST00000582687 378 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 AC124916.2-201ENST00000604416 224 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AL022099.1-201ENST00000604551 712 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 MIR6128-201ENST00000615528 109 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC098657.3-201ENST00000620434 263 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AL512643.1-201ENST00000635735 524 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 AC010149.2-201ENST00000637608 315 ntBASIC6.05□□□□□ -1.44
COL8A1P27658 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.05□□□□□ -1.44
COL8A1P27658 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.05□□□□□ -1.44
COL8A1P27658 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
COL8A1P27658 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL8A1P27658 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL8A1P27658 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL8A1P27658 AL133320.1-201ENST00000621423 2352 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 TMEM75-201ENST00000624314 2165 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
COL8A1P27658 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC6.04□□□□□ -1.44
COL8A1P27658 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL8A1P27658 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL8A1P27658 SPATA31C1-201ENST00000420021 3895 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 SAMMSON-222ENST00000641901 2727 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.04□□□□□ -1.44
COL8A1P27658 Y_RNA.60-201ENST00000362831 98 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 RNA5SP510-201ENST00000364697 99 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 SNORA20.1-201ENST00000364790 130 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 RNU6-169P-201ENST00000365336 107 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL8A1P27658 Y_RNA.389-201ENST00000383924 113 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 Y_RNA.463-201ENST00000384271 102 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 RNU6-472P-201ENST00000384299 107 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 Y_RNA.482-201ENST00000384377 111 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 RNU6-310P-201ENST00000384655 107 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 RNU6-606P-201ENST00000384721 111 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL8A1P27658 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL8A1P27658 AC073264.1-201ENST00000411508 416 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.04□□□□□ -1.44
COL8A1P27658 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.04□□□□□ -1.44
COL8A1P27658 DNAJC19P7-201ENST00000428811 344 ntBASIC6.04□□□□□ -1.44
COL8A1P27658 CEP57L1P1-201ENST00000430943 1201 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms