Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL133243.3-201ENST00000617415 3004 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 UBE2V1P15-201ENST00000407776 448 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 RPS20P14-201ENST00000412545 360 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 MTND4P15-201ENST00000437913 1033 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 AL157827.1-201ENST00000447622 132 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 IFITM8P-201ENST00000522529 394 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 AC023762.1-201ENST00000603280 584 ntBASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 CGA-201ENST00000369582 729 ntTSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 ENSAP1-201ENST00000392855 326 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 RN7SKP167-201ENST00000411047 285 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 KRR1P1-201ENST00000419430 803 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC093663.2-201ENST00000484625 313 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 RN7SKP157-201ENST00000516174 282 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 RNA5SP303-201ENST00000516192 130 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC026403.1-201ENST00000518938 295 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 VN1R92P-201ENST00000598511 928 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 BPIFA4P-203ENST00000603168 689 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC084757.4-201ENST00000616350 526 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AL356274.1-201ENST00000617064 410 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC007546.1-201ENST00000619452 559 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 AC073592.7-201ENST00000623659 507 ntBASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC8.29□□□□□ -1.08
SHROOM4Q9ULL8 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC032011.1-201ENST00000611703 1549 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 Z86062.1-201ENST00000406773 777 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC093578.1-201ENST00000415219 368 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 MTND4P24-201ENST00000424002 397 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AP000859.1-201ENST00000525536 307 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC105233.3-201ENST00000531125 744 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AC024341.1-201ENST00000526444 1552 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 AL359922.3-201ENST00000624779 1670 ntBASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SHROOM4Q9ULL8 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC8.27□□□□□ -1.08
SHROOM4Q9ULL8 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.08
SHROOM4Q9ULL8 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
SHROOM4Q9ULL8 RALGAPA1P1-201ENST00000443361 6232 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 MIR3065-201ENST00000390137 79 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AC233289.1-201ENST00000403700 508 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 OR2AH1P-201ENST00000425717 928 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AL500522.2-201ENST00000448562 343 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 RNA5SP246-201ENST00000458909 119 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 RPS4XP18-201ENST00000495480 763 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 MTCO1P31-201ENST00000506355 492 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 HMGB3P16-201ENST00000508037 287 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 CASP1-216ENST00000534497 825 ntTSL 5 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AC079587.1-201ENST00000603846 277 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 AC242628.1-201ENST00000606810 391 ntBASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
SHROOM4Q9ULL8 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms