Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 FAM133DP-201ENST00000464802 691 ntBASIC4.42□□□□□ -1.7
SDC3O75056 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.42□□□□□ -1.7
SDC3O75056 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.42□□□□□ -1.7
SDC3O75056 AC005912.1-201ENST00000495392 255 ntBASIC4.42□□□□□ -1.7
SDC3O75056 AF186190.1-201ENST00000517470 480 ntBASIC4.42□□□□□ -1.7
SDC3O75056 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.42□□□□□ -1.7
SDC3O75056 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.42□□□□□ -1.7
SDC3O75056 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.42□□□□□ -1.7
SDC3O75056 AC023158.1-201ENST00000561632 1025 ntBASIC4.42□□□□□ -1.7
SDC3O75056 BNIP3P5-201ENST00000562290 498 ntBASIC4.42□□□□□ -1.7
SDC3O75056 VN1R85P-201ENST00000601587 426 ntBASIC4.42□□□□□ -1.7
SDC3O75056 RNF138P2-201ENST00000603490 592 ntBASIC4.42□□□□□ -1.7
SDC3O75056 AL021368.1-201ENST00000607490 540 ntBASIC4.42□□□□□ -1.7
SDC3O75056 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SDC3O75056 AC079298.2-201ENST00000623885 459 ntBASIC4.42□□□□□ -1.7
SDC3O75056 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC3O75056 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC3O75056 AL451142.2-201ENST00000429076 2090 ntBASIC4.42□□□□□ -1.7
SDC3O75056 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SDC3O75056 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC3O75056 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC3O75056 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.42□□□□□ -1.7
SDC3O75056 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SDC3O75056 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SDC3O75056 AC090971.4-201ENST00000560291 1800 ntBASIC4.42□□□□□ -1.7
SDC3O75056 AC009951.1-201ENST00000623674 2614 ntBASIC4.42□□□□□ -1.7
SDC3O75056 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SDC3O75056 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 AC139713.2-215ENST00000641428 5037 ntBASIC4.41□□□□□ -1.7
SDC3O75056 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
SDC3O75056 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SDC3O75056 MAPK10-320ENST00000641462 6696 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC008033.1-201ENST00000216407 1162 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC008549.2-201ENST00000333482 706 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AL080315.1-201ENST00000406055 466 ntBASIC4.41□□□□□ -1.7
SDC3O75056 EIF4HP2-201ENST00000424380 563 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.41□□□□□ -1.7
SDC3O75056 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.41□□□□□ -1.7
SDC3O75056 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 RPL7P19-201ENST00000469948 618 ntBASIC4.41□□□□□ -1.7
SDC3O75056 UQCRHP4-201ENST00000471686 272 ntBASIC4.41□□□□□ -1.7
SDC3O75056 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.41□□□□□ -1.7
SDC3O75056 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.41□□□□□ -1.7
SDC3O75056 RNA5SP249-201ENST00000516127 99 ntBASIC4.41□□□□□ -1.7
SDC3O75056 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC134698.5-201ENST00000519444 336 ntBASIC4.41□□□□□ -1.7
SDC3O75056 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
SDC3O75056 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.41□□□□□ -1.7
SDC3O75056 DYNLL1P4-201ENST00000549314 266 ntBASIC4.41□□□□□ -1.7
SDC3O75056 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 RN7SL176P-201ENST00000580352 264 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.41□□□□□ -1.7
SDC3O75056 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.41□□□□□ -1.7
SDC3O75056 AC024941.1-201ENST00000612250 334 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AC016957.2-201ENST00000616998 848 ntBASIC4.41□□□□□ -1.7
SDC3O75056 AL592182.3-201ENST00000642132 3304 ntBASIC4.41□□□□□ -1.7
SDC3O75056 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
SDC3O75056 LINC01109-201ENST00000603837 3081 ntBASIC4.41□□□□□ -1.7
SDC3O75056 SALL4P2-201ENST00000423288 2910 ntBASIC4.41□□□□□ -1.7
SDC3O75056 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.41□□□□□ -1.7
SDC3O75056 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SDC3O75056 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SDC3O75056 ASNSP1-201ENST00000518311 1939 ntBASIC4.4□□□□□ -1.7
SDC3O75056 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SDC3O75056 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
SDC3O75056 DDX6P1-205ENST00000441966 1436 ntBASIC4.4□□□□□ -1.7
SDC3O75056 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.4□□□□□ -1.7
SDC3O75056 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
SDC3O75056 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SDC3O75056 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC3O75056 OR52B1P-201ENST00000316506 909 ntBASIC4.4□□□□□ -1.71
SDC3O75056 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC3O75056 SNORA37-201ENST00000384504 129 ntBASIC4.4□□□□□ -1.71
SDC3O75056 RNU6-146P-201ENST00000384602 108 ntBASIC4.4□□□□□ -1.71
SDC3O75056 RPS26P8-201ENST00000393490 348 ntBASIC4.4□□□□□ -1.71
SDC3O75056 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC3O75056 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC3O75056 AC073464.3-201ENST00000422564 712 ntBASIC4.4□□□□□ -1.71
SDC3O75056 RPS26P4-201ENST00000431743 355 ntBASIC4.4□□□□□ -1.71
SDC3O75056 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC3O75056 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC3O75056 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC3O75056 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC3O75056 AC005229.2-201ENST00000456995 399 ntBASIC4.4□□□□□ -1.71
SDC3O75056 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC3O75056 RPS27AP17-201ENST00000463344 455 ntBASIC4.4□□□□□ -1.71
SDC3O75056 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC3O75056 PARP4P3-201ENST00000510265 317 ntBASIC4.4□□□□□ -1.71
SDC3O75056 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC3O75056 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms