Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC4.31□□□□□ -1.72
LMX1BO60663 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC109446.2-201ENST00000567872 497 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.31□□□□□ -1.72
LMX1BO60663 MIR4270-201ENST00000581799 70 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.31□□□□□ -1.72
LMX1BO60663 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.31□□□□□ -1.72
LMX1BO60663 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC105254.2-201ENST00000603636 436 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AL161616.1-201ENST00000611867 286 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AC122108.2-201ENST00000611946 526 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AL122125.1-201ENST00000616999 600 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AC010975.3-201ENST00000618727 978 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 MIR7641-1-201ENST00000627518 61 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.31□□□□□ -1.72
LMX1BO60663 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
LMX1BO60663 AC139713.2-210ENST00000641741 992 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
LMX1BO60663 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.31□□□□□ -1.72
LMX1BO60663 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LMX1BO60663 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LMX1BO60663 AL603750.1-201ENST00000624216 1717 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LMX1BO60663 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.31□□□□□ -1.72
LMX1BO60663 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.31□□□□□ -1.72
LMX1BO60663 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.31□□□□□ -1.72
LMX1BO60663 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LMX1BO60663 AC026951.1-201ENST00000559530 2459 ntBASIC4.31□□□□□ -1.72
LMX1BO60663 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
LMX1BO60663 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 AC093909.5-201ENST00000621839 1799 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 SNORA73.1-201ENST00000363107 205 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 SNORD113-6-201ENST00000363345 75 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC002524.1-201ENST00000411687 547 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 CBX1P3-201ENST00000413296 527 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 CHEK2P3-201ENST00000416118 248 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL356320.2-201ENST00000417263 507 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 MTND4P3-201ENST00000417829 541 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 NDUFA5P10-201ENST00000432147 357 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 CDY12P-201ENST00000440679 1015 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 CDY13P-201ENST00000445813 1015 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 AL157827.1-201ENST00000447622 132 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 RHEBP2-201ENST00000450289 600 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 RPS4XP12-201ENST00000461747 709 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 RPL5P13-201ENST00000462840 709 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 RN7SL346P-201ENST00000491561 294 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC008897.1-201ENST00000494006 347 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC025459.1-201ENST00000504072 156 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 MIR3936-201ENST00000584304 110 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 RN7SL435P-201ENST00000584418 282 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC234771.5-201ENST00000600161 514 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL031320.1-201ENST00000604177 357 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC104687.2-201ENST00000604442 342 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AC025175.1-201ENST00000606482 759 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL360219.1-201ENST00000610230 366 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AL392048.1-201ENST00000613946 534 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 AC009318.3-201ENST00000616916 503 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 AC087385.3-201ENST00000620477 187 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AP000346.3-201ENST00000622821 210 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 AP000676.3-201ENST00000623299 569 ntBASIC4.3□□□□□ -1.72
LMX1BO60663 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.3□□□□□ -1.72
LMX1BO60663 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LMX1BO60663 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
LMX1BO60663 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 AC126323.6-202ENST00000568092 3511 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AL445523.1-201ENST00000451184 1362 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms