Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 RNU1-83P-201ENST00000363426 164 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 SNORD115-48-201ENST00000364764 76 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 ZNF965P-201ENST00000432501 817 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL035246.1-201ENST00000433554 1255 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL162151.2-201ENST00000448875 158 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 MTND2P25-201ENST00000449028 610 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 SETP12-201ENST00000514068 805 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 MTND4LP31-201ENST00000514859 294 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 MTHFD2P4-201ENST00000515074 1025 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 DYNLL1P4-201ENST00000549314 266 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AC007179.3-201ENST00000604976 235 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 BNIP3P19-201ENST00000605397 577 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL355802.4-201ENST00000607635 548 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 MIR6875-201ENST00000617506 72 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AC006840.1-201ENST00000623069 542 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL603750.1-201ENST00000624216 1717 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 AL022393.1-201ENST00000625142 1677 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 ANAPC1P1-201ENST00000426186 2145 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 TCP11X1-202ENST00000622971 1372 ntBASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC8.33□□□□□ -1.08
SHROOM4Q9ULL8 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RNA5SP124-201ENST00000362739 110 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RNU6-40P-201ENST00000384254 107 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RANP4-201ENST00000413361 655 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RPS29P7-201ENST00000439662 171 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC114495.1-201ENST00000441274 436 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 ALG13-211ENST00000473389 693 ntTSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC108120.2-201ENST00000512973 294 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 LSM1P2-201ENST00000604911 322 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL160281.1-201ENST00000605307 311 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 NPM1P37-201ENST00000403105 874 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AL356276.2-201ENST00000435919 558 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 UBE2V1P3-201ENST00000439651 417 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC012671.1-201ENST00000451912 203 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 IGLVVI-25-1-201ENST00000521893 249 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC018442.3-201ENST00000523025 183 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 MTCO3P22-201ENST00000603219 784 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 AC007342.8-201ENST00000623278 678 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 RPL23AP61-201ENST00000623642 466 ntBASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SHROOM4Q9ULL8 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 SNORD51.1-201ENST00000365405 77 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 RNU1-63P-201ENST00000383902 164 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AL356057.1-202ENST00000402263 756 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 PARP4P3-201ENST00000510265 317 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 OR8X1P-201ENST00000534542 869 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AL160290.3-201ENST00000604869 165 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC090912.3-201ENST00000609775 533 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 CR589904.2-201ENST00000612533 440 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC244100.1-202ENST00000621554 382 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 AC112484.5-201ENST00000624189 228 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 TEX41-256ENST00000626411 368 ntTSL 5 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 PHACTR2P1-201ENST00000605639 1414 ntBASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC8.31□□□□□ -1.08
SHROOM4Q9ULL8 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SHROOM4Q9ULL8 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms