Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 MFSD8-219ENST00000641228 2559 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC005614.1-201ENST00000598952 3653 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC110716.2-201ENST00000563865 3945 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 Y_RNA.133-201ENST00000363428 110 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RN7SKP107-201ENST00000364157 290 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RN7SKP237-201ENST00000364663 301 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RNA5SP279-201ENST00000365513 117 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 Y_RNA.401-201ENST00000383965 117 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RNU2-22P-201ENST00000411266 212 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC245054.2-201ENST00000415639 319 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RPL34P19-201ENST00000415903 342 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 UQCRHP1-204ENST00000424609 274 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 USP24P1-201ENST00000433802 779 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 RPS26P56-201ENST00000444468 240 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 VN1R38P-201ENST00000450265 887 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL133244.1-201ENST00000456007 258 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC005229.2-201ENST00000456995 399 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 MTND4P17-201ENST00000470444 350 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC112484.3-201ENST00000505910 329 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 IGLVV-66-201ENST00000523818 341 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AP005597.2-201ENST00000526238 341 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 DERA-209ENST00000532964 854 ntTSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC084121.1-201ENST00000533882 835 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC018630.1-201ENST00000541376 925 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC100830.2-201ENST00000581636 240 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC124303.1-201ENST00000605703 360 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 uc_338.15-201ENST00000615470 191 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 LINC02019-201ENST00000608605 2060 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 AC066616.2-201ENST00000559334 1481 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 SPATA31B1P-201ENST00000434692 4016 ntBASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIMD1Q9UGP4 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 AC016583.1-201ENST00000624221 2431 ntBASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
LIMD1Q9UGP4 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 AC034111.1-201ENST00000562143 3770 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 RN7SKP44-201ENST00000363602 316 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 SNORA68-201ENST00000384437 133 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 RNY4P36-201ENST00000391116 96 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 DSTNP4-201ENST00000399472 474 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 CNN3P1-201ENST00000401596 935 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 ARL5AP1-201ENST00000418991 388 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 KRTAP3-4P-201ENST00000430780 280 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 ATP6V1G1P4-201ENST00000438388 335 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 CEACAMP9-201ENST00000442990 513 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 AL590639.1-201ENST00000456484 337 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 RNU7-152P-201ENST00000458982 64 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 RN7SL180P-201ENST00000466769 294 ntBASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC7.21□□□□□ -1.26
LIMD1Q9UGP4 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms