Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AC114781.5-201ENST00000615297 108 ntBASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AL021997.2-201ENST00000615674 271 ntBASIC4.4□□□□□ -1.71
LHX3Q9UBR4 uc_338.9-201ENST00000617424 182 ntBASIC4.4□□□□□ -1.71
LHX3Q9UBR4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AP000843.1-201ENST00000624880 701 ntBASIC4.4□□□□□ -1.71
LHX3Q9UBR4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 AL592182.3-201ENST00000642132 3304 ntBASIC4.4□□□□□ -1.71
LHX3Q9UBR4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
LHX3Q9UBR4 NOL8P1-201ENST00000508336 3529 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL158163.1-201ENST00000603915 1649 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RAD1P1-201ENST00000231383 813 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RNA5SP175-201ENST00000364275 119 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RNU1-132P-201ENST00000364300 164 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RNU6-304P-201ENST00000364855 107 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 MIR1911-201ENST00000410783 80 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC105402.1-201ENST00000413336 545 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC099336.2-201ENST00000422457 254 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC073464.3-201ENST00000422564 712 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 ELOCP10-201ENST00000440624 327 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC007000.2-201ENST00000442564 487 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC099560.2-201ENST00000457554 255 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RPL7P48-201ENST00000461513 746 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 RPL7P22-201ENST00000466005 733 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC083829.1-201ENST00000503756 657 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 PSMB7P1-201ENST00000556349 514 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL390334.1-201ENST00000556395 450 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 ELOCP34-201ENST00000604436 327 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC025175.1-201ENST00000606482 759 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC091979.2-201ENST00000607514 214 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC083809.1-201ENST00000615051 472 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 MLECP1-201ENST00000615893 709 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 AL445363.3-201ENST00000623080 671 ntBASIC4.39□□□□□ -1.71
LHX3Q9UBR4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LHX3Q9UBR4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC139713.2-215ENST00000641428 5037 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RNA5SP22-201ENST00000365393 109 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC068538.1-201ENST00000376856 336 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC093719.1-202ENST00000392735 373 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 VDAC2P1-201ENST00000399358 958 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RPL6P29-201ENST00000414863 865 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC004448.2-201ENST00000422360 586 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AL157831.1-201ENST00000426134 473 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 ACTR3P2-201ENST00000439585 1257 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RPL34P26-201ENST00000445636 354 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RNU6-1218P-201ENST00000458990 108 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC109327.1-201ENST00000471666 403 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RN7SL817P-201ENST00000480777 288 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 RPL35P6-201ENST00000490024 372 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms