Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC006455.6-201ENST00000426192 893 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 BRWD1P3-201ENST00000428816 390 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 RPL12P3-201ENST00000440080 396 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 IGLV2-34-201ENST00000490007 283 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 MTATP6P22-201ENST00000507369 598 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC100770.1-201ENST00000532310 322 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AL109741.3-201ENST00000561748 592 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 BNIP3P32-201ENST00000600015 554 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 GTF2H2B-203ENST00000508065 1432 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 OR51C1P-202ENST00000641159 1444 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC139769.1-204ENST00000472297 1931 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC021146.4-201ENST00000309229 279 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 RNA5SP22-201ENST00000365393 109 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 U3.15-201ENST00000365398 212 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 RAD23BP1-201ENST00000421404 1227 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 CDY14P-201ENST00000431260 1014 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 CDY12P-201ENST00000440679 1015 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 CDY13P-201ENST00000445813 1015 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 CDY23P-201ENST00000451661 1014 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC091685.2-201ENST00000454924 864 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 RPS3AP41-201ENST00000462701 778 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 RN7SL610P-201ENST00000463845 291 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC092905.1-201ENST00000467527 949 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 SYT14P1-201ENST00000481459 721 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC093270.2-201ENST00000486157 792 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC008897.1-201ENST00000494006 347 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 MTND4LP2-201ENST00000502312 285 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC010374.1-201ENST00000503762 1237 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 NDUFA5P12-201ENST00000503796 343 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 STMN1P2-201ENST00000508435 439 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 IGKV2-36-201ENST00000519999 223 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 BRD9P1-201ENST00000529855 560 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC091042.1-201ENST00000579213 173 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 PCNAP1-202ENST00000595299 752 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 BPIFA4P-203ENST00000603168 689 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC083899.3-201ENST00000603413 594 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC023509.5-201ENST00000617434 807 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC009032.1-201ENST00000617574 431 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS39Q96JC1 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS39Q96JC1 AC134882.1-201ENST00000603738 1676 ntBASIC4.51□□□□□ -1.69
VPS39Q96JC1 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
VPS39Q96JC1 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS39Q96JC1 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 DCAF13P3-201ENST00000561147 1334 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 LINC00622-201ENST00000562811 1570 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC010928.1-201ENST00000592477 1447 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 RNU1-94P-201ENST00000362627 173 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 SNORA27.3-201ENST00000364937 134 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 MIR550A3-201ENST00000390735 95 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AL603766.1-201ENST00000407763 664 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 RNA5SP239-201ENST00000410218 129 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC004022.2-201ENST00000413824 193 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 UBTFL3-201ENST00000418934 1024 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC114814.2-201ENST00000419195 485 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 DYNLL1P7-201ENST00000429273 258 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms