Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MTND4P21-201ENST00000453886 1357 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC009501.3-201ENST00000605001 1352 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC125257.1-201ENST00000560400 2930 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 OR4K15-201ENST00000305051 1216 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 MIR937-201ENST00000401271 86 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 MTATP6P19-201ENST00000413797 659 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC069213.2-201ENST00000420238 366 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AP001324.1-201ENST00000428553 399 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 YWHAEP5-201ENST00000431545 765 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 XKRY2-201ENST00000442362 1093 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 RPL7P33-201ENST00000444159 742 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 CASP3P1-201ENST00000446037 609 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 ARL2BPP10-201ENST00000446487 531 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL162591.2-201ENST00000449634 317 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 NDUFS5P3-201ENST00000450668 321 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 SYT14P1-201ENST00000481459 721 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC007686.1-201ENST00000488511 463 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 HAUS1P1-201ENST00000505275 832 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 HIGD1AP18-201ENST00000520730 278 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC090819.1-201ENST00000523800 1111 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC137768.1-201ENST00000549998 553 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 CKS1BP1-201ENST00000555221 240 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC023158.1-201ENST00000561632 1025 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC069061.3-201ENST00000582254 823 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 ELOCP28-201ENST00000590044 317 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 HMGB2P1-201ENST00000591146 634 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC023762.1-201ENST00000603280 584 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC242628.1-201ENST00000606810 391 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC100847.1-201ENST00000611316 481 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL133243.1-201ENST00000614487 366 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL049536.1-201ENST00000625043 744 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 LINC01808-202ENST00000641680 1116 ntBASIC3.97□□□□□ -1.77
SKA3Q8IX90 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA3Q8IX90 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA3Q8IX90 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
SKA3Q8IX90 CPHL1P-201ENST00000461341 3407 ntBASIC3.96□□□□□ -1.77
SKA3Q8IX90 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC011155.1-201ENST00000316512 456 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 RNA5SP505-201ENST00000364748 108 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 RNA5SP151-201ENST00000365632 117 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SKA3Q8IX90 GLULP6-201ENST00000399502 913 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 FCF1P5-201ENST00000406490 482 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 UBE2V1P15-201ENST00000407776 448 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 UQCRBP1-201ENST00000421129 336 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 MTND4P24-201ENST00000424002 397 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 FHP1-201ENST00000442741 703 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 RPL23AP43-201ENST00000446445 471 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC012671.1-201ENST00000451912 203 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 OR52A4P-201ENST00000472867 958 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC012158.1-204ENST00000483430 465 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC108022.1-201ENST00000493466 478 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 OR9N1P-202ENST00000494289 481 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC006499.6-201ENST00000511169 607 ntBASIC3.96□□□□□ -1.78
SKA3Q8IX90 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms