Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.72□□□□□ -1.81
FOXF1Q12946 AC008785.1-201ENST00000624475 456 ntBASIC3.72□□□□□ -1.81
FOXF1Q12946 AC090506.2-201ENST00000624521 419 ntBASIC3.72□□□□□ -1.81
FOXF1Q12946 AC010608.2-201ENST00000624830 470 ntBASIC3.72□□□□□ -1.81
FOXF1Q12946 AP005264.7-201ENST00000625003 745 ntBASIC3.72□□□□□ -1.81
FOXF1Q12946 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
FOXF1Q12946 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
FOXF1Q12946 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
FOXF1Q12946 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
FOXF1Q12946 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
FOXF1Q12946 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
FOXF1Q12946 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
FOXF1Q12946 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 RNA5SP388-201ENST00000362584 119 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 RNA5SP502-201ENST00000362694 119 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 RNA5SP130-201ENST00000364431 114 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 SNORA70.2-201ENST00000364506 135 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 AL022722.2-201ENST00000402519 180 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 PTMAP3-201ENST00000447474 330 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXF1Q12946 AL121877.1-201ENST00000453704 622 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 AC133473.1-201ENST00000455173 299 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXF1Q12946 RPL7P1-201ENST00000468161 747 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
FOXF1Q12946 RPL7P9-201ENST00000468715 747 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 RN7SL385P-201ENST00000468873 276 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 RPL23AP2-201ENST00000471227 466 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXF1Q12946 AC025554.1-201ENST00000505641 188 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 RNU7-143P-201ENST00000516781 65 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 IGKV2D-10-201ENST00000520194 281 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.71□□□□□ -1.82
FOXF1Q12946 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXF1Q12946 QTRT1P1-201ENST00000604344 1078 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXF1Q12946 AL591034.3-201ENST00000605511 685 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 AC010809.3-201ENST00000621310 641 ntBASIC3.71□□□□□ -1.82
FOXF1Q12946 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.71□□□□□ -1.82
FOXF1Q12946 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
FOXF1Q12946 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 HSPD1P11-201ENST00000508643 1702 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 AC012020.1-201ENST00000624541 1728 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 DDX18P3-201ENST00000404856 2007 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXF1Q12946 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 MIR708-201ENST00000390708 88 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 RAB28P1-201ENST00000411517 641 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 EIF4A1P3-201ENST00000411521 244 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 HSPE1P12-201ENST00000412576 301 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 OR8G2P-201ENST00000412796 908 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 TPT1P2-201ENST00000413105 503 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 OR5BE1P-201ENST00000425977 939 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 RSL24D1P6-201ENST00000426934 401 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 NANOGP6-201ENST00000429190 847 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AL356276.2-201ENST00000435919 558 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 CCDC75P1-201ENST00000469247 791 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXF1Q12946 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 OR5M7P-201ENST00000526140 972 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AC079171.1-201ENST00000568788 914 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 AC025627.2-201ENST00000576220 160 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXF1Q12946 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 OR5BE1P-202ENST00000641168 1176 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 MARK2P15-201ENST00000432204 2186 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms