Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC099654.6-201ENST00000636487 512 ntBASIC5.34□□□□□ -1.55
MSX2P35548 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 AC008627.1-201ENST00000517511 1704 ntBASIC5.34□□□□□ -1.56
MSX2P35548 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.56
MSX2P35548 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 AC097461.1-201ENST00000568928 2821 ntBASIC5.33□□□□□ -1.56
MSX2P35548 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 PWAR1-201ENST00000624188 2414 ntBASIC5.33□□□□□ -1.56
MSX2P35548 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 FGF7P2-201ENST00000332473 296 ntBASIC5.33□□□□□ -1.56
MSX2P35548 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 RN7SKP171-201ENST00000364417 303 ntBASIC5.33□□□□□ -1.56
MSX2P35548 Y_RNA.311-201ENST00000365068 96 ntBASIC5.33□□□□□ -1.56
MSX2P35548 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 RNU6-259P-201ENST00000383999 107 ntBASIC5.33□□□□□ -1.56
MSX2P35548 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
MSX2P35548 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.33□□□□□ -1.56
MSX2P35548 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 CCDC58P2-201ENST00000417131 366 ntBASIC5.33□□□□□ -1.56
MSX2P35548 UBTFL3-201ENST00000418934 1024 ntBASIC5.33□□□□□ -1.56
MSX2P35548 THEM7P-201ENST00000419556 672 ntBASIC5.33□□□□□ -1.56
MSX2P35548 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.33□□□□□ -1.56
MSX2P35548 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.33□□□□□ -1.56
MSX2P35548 LARP1BP3-201ENST00000437229 869 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AP000936.3-201ENST00000438127 255 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AL353093.1-201ENST00000441292 436 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 EEF1B2P3-201ENST00000447718 678 ntBASIC5.33□□□□□ -1.56
MSX2P35548 EPS15P1-201ENST00000448836 336 ntBASIC5.33□□□□□ -1.56
MSX2P35548 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 CBX1P2-201ENST00000453841 458 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 MTND1P16-201ENST00000465177 898 ntBASIC5.33□□□□□ -1.56
MSX2P35548 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 UBTFL6-201ENST00000477929 1024 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC114324.2-202ENST00000503812 134 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 AC104108.1-201ENST00000509930 412 ntBASIC5.33□□□□□ -1.56
MSX2P35548 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 RNU6-718P-201ENST00000516166 105 ntBASIC5.33□□□□□ -1.56
MSX2P35548 RNA5SP473-201ENST00000516402 125 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC087808.1-201ENST00000520501 361 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC138832.1-201ENST00000522871 556 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 AC107958.1-201ENST00000556576 290 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.33□□□□□ -1.56
MSX2P35548 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 AC015871.2-201ENST00000603605 948 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC092681.3-201ENST00000609463 678 ntBASIC5.33□□□□□ -1.56
MSX2P35548 TUG1_1.1-201ENST00000610654 145 ntBASIC5.33□□□□□ -1.56
MSX2P35548 MIR7109-201ENST00000613748 65 ntBASIC5.33□□□□□ -1.56
MSX2P35548 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX2P35548 AC005840.5-201ENST00000619166 599 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC092794.2-201ENST00000620933 563 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AC016717.3-201ENST00000624730 554 ntBASIC5.33□□□□□ -1.56
MSX2P35548 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX2P35548 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX2P35548 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX2P35548 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 MTCO1P6-201ENST00000481192 1384 ntBASIC5.32□□□□□ -1.56
MSX2P35548 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 LINC01613-201ENST00000561476 2780 ntBASIC5.32□□□□□ -1.56
MSX2P35548 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms