Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 MTND1P9-201ENST00000453775 944 ntBASIC6.41□□□□□ -1.38
MSX1P28360 RPS20P32-201ENST00000456044 356 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC006512.1-201ENST00000468816 291 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC104563.1-201ENST00000476147 376 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC098583.1-201ENST00000480875 255 ntBASIC6.41□□□□□ -1.38
MSX1P28360 RPL7P6-201ENST00000480903 738 ntBASIC6.41□□□□□ -1.38
MSX1P28360 RPS10P20-201ENST00000494130 463 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX1P28360 RN7SKP295-201ENST00000517264 153 ntBASIC6.41□□□□□ -1.38
MSX1P28360 IGHVIII-25-1-201ENST00000522143 241 ntBASIC6.41□□□□□ -1.38
MSX1P28360 GLYATL1P4-201ENST00000529326 906 ntBASIC6.41□□□□□ -1.38
MSX1P28360 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX1P28360 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX1P28360 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.41□□□□□ -1.38
MSX1P28360 MYL12BP1-201ENST00000569826 507 ntBASIC6.41□□□□□ -1.38
MSX1P28360 ACTG1P15-201ENST00000570019 1063 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC138207.8-204ENST00000579588 527 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC010463.3-201ENST00000594077 500 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX1P28360 AC111186.1-201ENST00000604684 130 ntBASIC6.41□□□□□ -1.38
MSX1P28360 MIR6780B-201ENST00000610307 79 ntBASIC6.41□□□□□ -1.38
MSX1P28360 RN7SL126P-201ENST00000616400 299 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX1P28360 AL161420.1-201ENST00000619393 264 ntBASIC6.41□□□□□ -1.38
MSX1P28360 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
MSX1P28360 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
MSX1P28360 NCOA4P3-201ENST00000513203 1877 ntBASIC6.41□□□□□ -1.38
MSX1P28360 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 AC020978.6-201ENST00000571197 3177 ntBASIC6.41□□□□□ -1.38
MSX1P28360 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 AC092125.1-201ENST00000562568 1995 ntBASIC6.4□□□□□ -1.38
MSX1P28360 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 AC104837.1-201ENST00000444644 1587 ntBASIC6.4□□□□□ -1.38
MSX1P28360 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX1P28360 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
MSX1P28360 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 AL121950.1-201ENST00000624993 2077 ntBASIC6.4□□□□□ -1.38
MSX1P28360 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
MSX1P28360 Y_RNA.373-201ENST00000365600 103 ntBASIC6.4□□□□□ -1.38
MSX1P28360 PDCL3P5-201ENST00000398028 722 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RNU6-370P-201ENST00000411008 104 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RNA5SP280-201ENST00000411230 115 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RNU2-6P-201ENST00000411404 190 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 METTL15P3-201ENST00000415522 1221 ntBASIC6.4□□□□□ -1.38
MSX1P28360 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 DUTP4-201ENST00000424782 475 ntBASIC6.4□□□□□ -1.38
MSX1P28360 MYL6P3-201ENST00000436904 432 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC002381.1-201ENST00000447049 280 ntBASIC6.4□□□□□ -1.38
MSX1P28360 MORF4-201ENST00000447135 971 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX1P28360 AC107399.1-201ENST00000451226 265 ntBASIC6.4□□□□□ -1.38
MSX1P28360 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX1P28360 RPL31P11-202ENST00000454082 372 ntBASIC6.4□□□□□ -1.38
MSX1P28360 CEACAMP4-201ENST00000457676 421 ntBASIC6.4□□□□□ -1.38
MSX1P28360 GAPDHP53-201ENST00000458397 924 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RN7SL372P-201ENST00000461982 298 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RPL21P99-201ENST00000480369 423 ntBASIC6.4□□□□□ -1.38
MSX1P28360 RN7SL655P-201ENST00000486087 298 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC083904.1-201ENST00000487828 231 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 AP001025.2-201ENST00000490908 477 ntBASIC6.4□□□□□ -1.38
MSX1P28360 HMGB1P30-201ENST00000492455 606 ntBASIC6.4□□□□□ -1.38
MSX1P28360 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX1P28360 AC091965.3-201ENST00000506236 208 ntBASIC6.4□□□□□ -1.38
MSX1P28360 MRPS35P2-201ENST00000508242 191 ntBASIC6.4□□□□□ -1.38
MSX1P28360 Y_RNA.682-201ENST00000516457 100 ntBASIC6.4□□□□□ -1.38
MSX1P28360 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX1P28360 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX1P28360 CARSP2-201ENST00000520688 277 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AP005902.1-201ENST00000521358 186 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC008562.1-201ENST00000521763 330 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC6.4□□□□□ -1.38
MSX1P28360 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX1P28360 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX1P28360 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.4□□□□□ -1.38
MSX1P28360 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 AC022884.3-201ENST00000579571 248 ntBASIC6.4□□□□□ -1.38
MSX1P28360 MAGOH2P-202ENST00000584384 429 ntBASIC6.4□□□□□ -1.38
MSX1P28360 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms