Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC019155.1-201ENST00000382242 574 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 RNA5SP87-201ENST00000384155 118 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AL035405.1-201ENST00000400795 710 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 DNAJC19P6-201ENST00000401853 280 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 RNA5SP113-201ENST00000410486 84 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC241520.1-201ENST00000422654 1099 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 YWHAEP5-201ENST00000431545 765 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC092162.1-201ENST00000432828 434 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 TMX2P1-201ENST00000436507 708 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC009263.1-201ENST00000441193 1239 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 HMGB3P21-201ENST00000452483 547 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC092905.1-201ENST00000467527 949 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 RPL30P11-201ENST00000495304 339 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC098799.3-201ENST00000506095 438 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 OR7H2P-201ENST00000513483 306 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 RNA5SP392-201ENST00000516905 112 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 Y_RNA.719-201ENST00000517156 106 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 SETP1-201ENST00000556014 845 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AL049839.1-201ENST00000556151 657 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 UBE2FP2-201ENST00000566646 462 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AL512782.1-201ENST00000603093 364 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC010424.2-201ENST00000607594 443 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AC092608.3-201ENST00000625017 386 ntBASIC4.98□□□□□ -1.61
VPS28Q9UK41 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 A2MP1-204ENST00000566278 4130 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 NSRP1P1-201ENST00000444067 1693 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AL355615.1-201ENST00000406187 641 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC114755.2-201ENST00000413520 361 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AL138785.1-201ENST00000425821 331 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC092809.1-201ENST00000441469 474 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 RPL7P33-201ENST00000444159 742 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 GXYLT1P1-201ENST00000446657 490 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 DNAJC19P8-201ENST00000452887 259 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 RPS4XP6-201ENST00000477670 797 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC020890.1-201ENST00000491837 504 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 IGBP1P5-201ENST00000507524 1000 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 PGBD4P4-201ENST00000509673 613 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC112198.4-201ENST00000515450 351 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC139103.1-201ENST00000534696 1030 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AP001880.2-201ENST00000538233 448 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 SNORA74C-1-201ENST00000580726 201 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC011477.5-201ENST00000586571 259 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AP002906.1-201ENST00000603405 233 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC007497.1-201ENST00000610421 561 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AL121890.3-201ENST00000618494 516 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC073342.3-201ENST00000624211 193 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms