Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 MIR128-1-201ENST00000384921 82 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RPL21P17-201ENST00000397467 475 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 OR9M1P-201ENST00000459641 921 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RN7SL323P-201ENST00000494712 295 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RNU1-95P-201ENST00000516357 160 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RNU1-128P-201ENST00000516704 160 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC091516.1-201ENST00000549191 703 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC015726.1-201ENST00000602353 681 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 U3.45-201ENST00000607547 219 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC015922.4-201ENST00000612568 690 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 MAPK10-286ENST00000641208 8747 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC083843.3-201ENST00000623679 2186 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 U3.23-201ENST00000391132 200 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 SNORA57.3-201ENST00000411095 141 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 SYF2P2-201ENST00000417620 583 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 BX119904.3-201ENST00000428194 957 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RPL23AP25-201ENST00000430973 463 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RAD23BP3-201ENST00000454157 1152 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 NDUFA5P2-201ENST00000519723 344 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AL049840.6-202ENST00000603373 279 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 QTRT1P1-201ENST00000604344 1078 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AC064801.1-201ENST00000612025 407 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 CR392039.4-201ENST00000624968 501 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 AF001550.2-201ENST00000636643 217 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 CYCSP28-201ENST00000534284 321 ntBASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 AC005255.1-201ENST00000593748 216 ntBASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 AL031666.3-201ENST00000609320 1006 ntBASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 ZNF962P-201ENST00000443465 3140 ntBASIC5.25□□□□□ -1.57
SHANK3Q9BYB0 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 MIR30B-201ENST00000384850 88 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 SNORA48.2-201ENST00000390926 124 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC245052.5-201ENST00000416320 649 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 RPL12P46-201ENST00000436610 195 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC006994.1-201ENST00000438212 839 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 RPL7P24-201ENST00000493052 752 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 AC015871.5-202ENST00000623252 701 ntBASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SHANK3Q9BYB0 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SHANK3Q9BYB0 SNORA60-201ENST00000362396 134 ntBASIC5.23□□□□□ -1.57
SHANK3Q9BYB0 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SHANK3Q9BYB0 AL358178.1-201ENST00000407698 397 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms