Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXC9P31274 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 MIR421-201ENST00000365696 85 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 AL357078.2-201ENST00000416486 427 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 AC013470.3-201ENST00000420252 1194 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 RPL23AP46-201ENST00000438548 490 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC9P31274 RPL23AP2-201ENST00000471227 466 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXC9P31274 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC9P31274 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC9P31274 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 HMGB1P51-201ENST00000605166 638 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 AL353726.1-201ENST00000614041 1000 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXC9P31274 AC039056.2-201ENST00000622261 511 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
HOXC9P31274 USP9YP4-201ENST00000424401 1745 ntBASIC5.59□□□□□ -1.51
HOXC9P31274 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC9P31274 CASC19-261ENST00000641853 1638 ntBASIC5.59□□□□□ -1.52
HOXC9P31274 AC083843.2-201ENST00000568248 6253 ntBASIC5.59□□□□□ -1.52
HOXC9P31274 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 DDX6P1-205ENST00000441966 1436 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 AL442128.2-201ENST00000620246 1824 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 ZNF402P-201ENST00000404435 3100 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 SEPT7P8-201ENST00000413308 775 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 HMGB3P5-201ENST00000428894 612 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 MTCO1P45-201ENST00000431457 267 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 PPIAP13-201ENST00000434706 478 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 AC105918.1-201ENST00000474399 838 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 RN7SL817P-201ENST00000480777 288 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC9P31274 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 NDUFB4P12-201ENST00000513465 390 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 RNU6-319P-201ENST00000516025 108 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC9P31274 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC9P31274 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC9P31274 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC9P31274 FAM91A3P-201ENST00000456826 2544 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 AC116667.1-201ENST00000604855 2072 ntBASIC5.58□□□□□ -1.52
HOXC9P31274 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC9P31274 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC9P31274 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 AC093909.5-201ENST00000621839 1799 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXC9P31274 OR10AB1P-202ENST00000641219 1686 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HOXC9P31274 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC9P31274 DDX18P6-201ENST00000450119 1997 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 THAP12P5-201ENST00000405864 2275 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
HOXC9P31274 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
HOXC9P31274 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC9P31274 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 CCNB2P1-201ENST00000399411 1150 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 RNU4-6P-201ENST00000410804 122 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC9P31274 AL031584.1-201ENST00000447169 754 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AC090543.1-201ENST00000492168 485 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 HPRT1P2-201ENST00000505250 544 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 AC090151.1-201ENST00000520784 730 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXC9P31274 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC9P31274 AL136520.1-202ENST00000555494 763 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AC053481.3-201ENST00000577881 843 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXC9P31274 BNIP3P22-201ENST00000593399 556 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AL451086.1-201ENST00000605596 223 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 AL158211.2-201ENST00000607282 395 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 AC099669.2-201ENST00000616549 437 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms