Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RN7SKP263-201ENST00000411194 309 ntBASIC3.84□□□□□ -1.79
USF1P22415 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.84□□□□□ -1.79
USF1P22415 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USF1P22415 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.84□□□□□ -1.79
USF1P22415 MTCO3P21-201ENST00000430791 643 ntBASIC3.84□□□□□ -1.79
USF1P22415 ARL4AP3-201ENST00000441452 574 ntBASIC3.84□□□□□ -1.79
USF1P22415 AL162388.1-201ENST00000450912 352 ntBASIC3.84□□□□□ -1.79
USF1P22415 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.84□□□□□ -1.79
USF1P22415 RPL5P13-201ENST00000462840 709 ntBASIC3.84□□□□□ -1.79
USF1P22415 CCDC75P1-201ENST00000469247 791 ntBASIC3.84□□□□□ -1.79
USF1P22415 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.84□□□□□ -1.79
USF1P22415 METTL15P1-201ENST00000481421 1045 ntBASIC3.84□□□□□ -1.79
USF1P22415 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.84□□□□□ -1.79
USF1P22415 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USF1P22415 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.84□□□□□ -1.79
USF1P22415 AC105129.1-201ENST00000560250 297 ntBASIC3.84□□□□□ -1.79
USF1P22415 AC074050.1-201ENST00000563247 211 ntBASIC3.84□□□□□ -1.79
USF1P22415 AC018552.3-201ENST00000567416 561 ntBASIC3.84□□□□□ -1.79
USF1P22415 MIR3160-1-201ENST00000577972 85 ntBASIC3.84□□□□□ -1.79
USF1P22415 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.84□□□□□ -1.79
USF1P22415 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.84□□□□□ -1.79
USF1P22415 IPO5P1-202ENST00000600039 287 ntBASIC3.84□□□□□ -1.79
USF1P22415 AC010200.2-201ENST00000605098 235 ntBASIC3.84□□□□□ -1.79
USF1P22415 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.84□□□□□ -1.79
USF1P22415 AC019080.5-201ENST00000624891 757 ntBASIC3.84□□□□□ -1.79
USF1P22415 LINC01808-202ENST00000641680 1116 ntBASIC3.84□□□□□ -1.79
USF1P22415 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USF1P22415 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
USF1P22415 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
USF1P22415 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
USF1P22415 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
USF1P22415 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.84□□□□□ -1.8
USF1P22415 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.84□□□□□ -1.8
USF1P22415 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
USF1P22415 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
USF1P22415 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.83□□□□□ -1.8
USF1P22415 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 AC021146.4-201ENST00000309229 279 ntBASIC3.83□□□□□ -1.8
USF1P22415 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USF1P22415 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 RNU6-984P-201ENST00000363236 109 ntBASIC3.83□□□□□ -1.8
USF1P22415 Y_RNA.126-201ENST00000363382 111 ntBASIC3.83□□□□□ -1.8
USF1P22415 RNA5SP28-201ENST00000363841 119 ntBASIC3.83□□□□□ -1.8
USF1P22415 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 SNORA70C-201ENST00000384538 135 ntBASIC3.83□□□□□ -1.8
USF1P22415 RNU6-603P-201ENST00000411403 107 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC011933.1-201ENST00000413334 321 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AL158073.1-201ENST00000426848 1104 ntBASIC3.83□□□□□ -1.8
USF1P22415 RPS27AP12-201ENST00000429552 465 ntBASIC3.83□□□□□ -1.8
USF1P22415 RPS29P17-201ENST00000430795 166 ntBASIC3.83□□□□□ -1.8
USF1P22415 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC3.83□□□□□ -1.8
USF1P22415 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 PSMC1P13-201ENST00000458195 985 ntBASIC3.83□□□□□ -1.8
USF1P22415 SCARNA10-201ENST00000459255 330 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC116533.1-201ENST00000459748 321 ntBASIC3.83□□□□□ -1.8
USF1P22415 RN7SL41P-201ENST00000476144 297 ntBASIC3.83□□□□□ -1.8
USF1P22415 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC034244.2-201ENST00000514668 858 ntBASIC3.83□□□□□ -1.8
USF1P22415 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.83□□□□□ -1.8
USF1P22415 MTCO1P35-201ENST00000515270 228 ntBASIC3.83□□□□□ -1.8
USF1P22415 MIR2116-201ENST00000517221 80 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC067904.2-201ENST00000517322 1283 ntBASIC3.83□□□□□ -1.8
USF1P22415 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.83□□□□□ -1.8
USF1P22415 OR7E10P-201ENST00000526420 991 ntBASIC3.83□□□□□ -1.8
USF1P22415 AP000827.1-201ENST00000527814 258 ntBASIC3.83□□□□□ -1.8
USF1P22415 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC007224.1-201ENST00000564410 144 ntBASIC3.83□□□□□ -1.8
USF1P22415 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC069366.1-201ENST00000583159 838 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AC011477.5-201ENST00000586571 259 ntBASIC3.83□□□□□ -1.8
USF1P22415 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.83□□□□□ -1.8
USF1P22415 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 ARF4P1-201ENST00000605447 541 ntBASIC3.83□□□□□ -1.8
USF1P22415 COX6CP4-201ENST00000605798 228 ntBASIC3.83□□□□□ -1.8
USF1P22415 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.83□□□□□ -1.8
USF1P22415 AL391597.1-201ENST00000618707 694 ntBASIC3.83□□□□□ -1.8
USF1P22415 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USF1P22415 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.83□□□□□ -1.8
USF1P22415 AC009229.4-201ENST00000623854 1947 ntBASIC3.83□□□□□ -1.8
USF1P22415 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms