Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC007938.2-201ENST00000604666 2634 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC018809.2-201ENST00000602436 3823 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 EED-206ENST00000527888 1422 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 SSXP3-201ENST00000442971 1300 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 DDX18P6-201ENST00000450119 1997 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 COX6B1P3-201ENST00000312310 260 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 IL6STP1-201ENST00000346911 1020 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 U3.7-201ENST00000363668 216 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 CXADRP1-201ENST00000398098 1095 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 CIR1P3-201ENST00000405137 479 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC002524.1-201ENST00000411687 547 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AL022400.1-201ENST00000423946 935 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC009784.1-201ENST00000426484 460 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 GEMIN2P1-201ENST00000454246 752 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 DNAJC19P1-201ENST00000455312 319 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 RPS20P24-201ENST00000457473 361 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC068228.1-201ENST00000461723 211 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC099521.1-201ENST00000482557 334 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 EIF3LP3-201ENST00000495197 822 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC093824.1-201ENST00000508796 343 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 OR5AZ1P-201ENST00000527448 943 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC007956.1-201ENST00000555623 542 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC026826.3-201ENST00000561747 158 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC008507.3-201ENST00000585753 472 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 UBE2V2P2-201ENST00000587677 504 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC103792.1-201ENST00000603591 919 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AC015871.2-201ENST00000603605 948 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 AP000860.1-201ENST00000605250 559 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 MIR4278-201ENST00000636094 69 ntBASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC39Q9UFE4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RNU1-65P-201ENST00000363919 148 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RNU6-348P-201ENST00000384386 107 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL590004.1-201ENST00000405321 300 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RPL21P108-201ENST00000413857 481 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL139421.1-201ENST00000423010 169 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC092427.1-201ENST00000439177 601 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 TCEA1P3-201ENST00000443005 880 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 GTF2IP12-201ENST00000456547 356 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL672167.3-201ENST00000465951 960 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC006539.1-201ENST00000481419 501 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms