Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SNRPCP2-201ENST00000504370 475 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 HMGB1P19-201ENST00000517578 577 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 REXO2-218ENST00000544827 880 ntTSL 3 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC013468.1-201ENST00000608680 598 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC096586.1-201ENST00000610267 561 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC024257.5-201ENST00000612739 531 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 RPSAP73-201ENST00000614820 330 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC090116.1-201ENST00000615679 446 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 MIR6133-201ENST00000617057 108 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AL023881.1-201ENST00000621088 301 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC067852.7-201ENST00000623270 535 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AP000676.3-201ENST00000623299 569 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 LINC01808-202ENST00000641680 1116 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 AL360270.2-201ENST00000562952 5985 ntBASIC5.34□□□□□ -1.55
DKK3Q9UBP4 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
DKK3Q9UBP4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.34□□□□□ -1.56
DKK3Q9UBP4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
DKK3Q9UBP4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.56
DKK3Q9UBP4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 BX005019.1-201ENST00000561881 1810 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC103591.2-201ENST00000265259 766 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 SNORA17.1-201ENST00000362945 126 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNA5SP507-201ENST00000363603 121 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNU1-43P-201ENST00000365052 165 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNA5SP223-201ENST00000365174 120 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNU4-31P-201ENST00000384211 141 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 MIR105-1-201ENST00000385222 81 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ERHP2-201ENST00000402323 299 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 NUDT19P3-201ENST00000404698 555 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 DUTP5-201ENST00000406790 469 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RN7SKP273-201ENST00000411392 314 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RPF2P1-201ENST00000424137 906 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC124944.2-201ENST00000429866 1242 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC005345.1-201ENST00000431868 217 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC090018.1-201ENST00000434369 367 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC016772.1-201ENST00000444170 1261 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC097499.1-201ENST00000444277 208 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 EEF1B2P5-201ENST00000444820 548 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC068135.1-201ENST00000446164 246 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 DNAJB5P1-201ENST00000454004 806 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNA5SP103-201ENST00000459503 118 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC024940.3-201ENST00000538551 316 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC084824.1-201ENST00000550917 1005 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AP001269.3-201ENST00000588718 329 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AL121612.2-201ENST00000612261 482 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC010435.1-201ENST00000623353 1177 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC109454.4-201ENST00000623411 649 ntBASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
DKK3Q9UBP4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 AC026951.1-201ENST00000559530 2459 ntBASIC5.32□□□□□ -1.56
DKK3Q9UBP4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
DKK3Q9UBP4 AC008549.2-201ENST00000333482 706 ntBASIC5.32□□□□□ -1.56
DKK3Q9UBP4 RNA5SP27-201ENST00000363839 119 ntBASIC5.32□□□□□ -1.56
DKK3Q9UBP4 FABP12P1-201ENST00000401911 322 ntBASIC5.32□□□□□ -1.56
DKK3Q9UBP4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms