Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SIX2Q9NPC8 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
SIX2Q9NPC8 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 RNU1-94P-201ENST00000362627 173 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 RNU6-398P-201ENST00000384143 109 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CYB5AP4-201ENST00000396692 399 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL356387.2-201ENST00000422272 243 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 EIF4EP1-201ENST00000422311 642 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 PTP4A1P3-201ENST00000433661 420 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL512661.1-201ENST00000434586 1253 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 NPM1P33-201ENST00000438918 872 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 RPL23AP52-201ENST00000439311 478 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 RN7SL812P-201ENST00000493791 279 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC111000.3-201ENST00000508057 576 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC134698.5-201ENST00000519444 336 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 TRAV8-5-201ENST00000537369 341 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AL109766.1-201ENST00000555080 552 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 SETP1-201ENST00000556014 845 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC023158.1-201ENST00000561632 1025 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 AC008013.2-202ENST00000637965 364 ntBASIC4.66□□□□□ -1.66
SIX2Q9NPC8 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
SIX2Q9NPC8 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 CASC19-261ENST00000641853 1638 ntBASIC4.65□□□□□ -1.66
SIX2Q9NPC8 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SIX2Q9NPC8 AC010132.2-201ENST00000295493 1043 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 RNA5SP52-201ENST00000362448 134 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 VDAC2P1-201ENST00000399358 958 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 GSTA12P-201ENST00000402398 508 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 RPS16P5-201ENST00000406501 404 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL139128.1-201ENST00000413921 941 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 RPS23P10-201ENST00000416185 486 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 MTCYBP32-201ENST00000427945 1084 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 LYPLA1P1-201ENST00000434514 622 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 NAMPTP2-201ENST00000505629 1115 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC004923.2-201ENST00000529649 369 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC006064.5-201ENST00000541782 248 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC137768.1-201ENST00000549998 553 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 HMGN2P47-201ENST00000559378 272 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC087283.1-201ENST00000604029 1074 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL445363.3-201ENST00000623080 671 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AL356118.1-201ENST00000635272 1078 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 AC120338.1-201ENST00000625074 1541 ntBASIC4.65□□□□□ -1.67
SIX2Q9NPC8 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SIX2Q9NPC8 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms