Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 AL359715.4-201ENST00000606629 1436 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC017002.4-201ENST00000604721 1525 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 RAD17P1-201ENST00000418130 2042 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 RNU6-666P-201ENST00000363499 107 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 GCNT6-201ENST00000379591 934 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 EIF4A1P3-201ENST00000411521 244 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 RPL6P29-201ENST00000414863 865 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 RPEP3-201ENST00000425462 676 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AL590623.1-201ENST00000427864 105 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 TRIM60P13-201ENST00000432350 1283 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 GEMIN8P3-201ENST00000445417 720 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 RPL23AP43-201ENST00000446445 471 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 RPS4XP18-201ENST00000495480 763 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 RNU6-347P-201ENST00000516658 105 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC090281.1-201ENST00000523019 276 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC022884.3-201ENST00000579571 248 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 MIR5096-201ENST00000583713 70 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 SS18L2P2-201ENST00000583960 235 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 RPL12P25-202ENST00000598100 674 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AC123786.2-201ENST00000603459 275 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AP003497.2-201ENST00000624220 967 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 BMS1P21-201ENST00000634565 365 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS35Q96QK1 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.47□□□□□ -1.69
VPS35Q96QK1 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
VPS35Q96QK1 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.46□□□□□ -1.69
VPS35Q96QK1 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.69
VPS35Q96QK1 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS35Q96QK1 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC090017.1-201ENST00000548612 1779 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 RNU6-304P-201ENST00000364855 107 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 SNORD96B-201ENST00000386148 79 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPL23AP48-201ENST00000406913 488 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC062016.2-201ENST00000420950 676 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPL7AP25-201ENST00000423357 805 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 DPY19L1P2-201ENST00000426647 915 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPS12P10-201ENST00000427031 377 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPL12P28-201ENST00000430852 489 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 ARL4AP3-201ENST00000441452 574 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC012671.1-201ENST00000451912 203 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AL121877.1-201ENST00000453704 622 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPL23AP65-201ENST00000475608 468 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC010627.1-201ENST00000503819 1294 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC093720.1-201ENST00000505681 714 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 RNA5SP497-201ENST00000516081 97 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 MYL12AP1-201ENST00000518490 515 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 NPM1P47-201ENST00000560843 856 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 MIR4715-201ENST00000584117 79 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 RPL7P50-201ENST00000600588 727 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC012409.3-201ENST00000611343 981 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC006065.6-201ENST00000625201 545 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS35Q96QK1 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AC139769.1-204ENST00000472297 1931 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS35Q96QK1 AL137100.1-201ENST00000556703 1620 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms