Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NPM1P47-201ENST00000560843 856 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 SULT1C2P2-201ENST00000562517 294 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC095057.3-201ENST00000567102 1157 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AL022067.1-201ENST00000602426 454 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 MEMO1P5-201ENST00000604810 406 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 uc_338.9-201ENST00000617424 182 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC024595.1-201ENST00000623088 387 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC138907.10-201ENST00000623708 983 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AP003400.3-201ENST00000624904 346 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AL590396.4-201ENST00000636779 956 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LINC01808-202ENST00000641680 1116 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 KARSP3-201ENST00000571212 1504 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC021242.1-201ENST00000507315 2035 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RNA5SP191-201ENST00000362585 102 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 SNORD65C-201ENST00000390962 71 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RNA5SP241-201ENST00000391326 114 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 MIR298-201ENST00000401212 88 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RNA5SP113-201ENST00000410486 84 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 MTCO2P8-201ENST00000412213 658 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AL158073.1-201ENST00000426848 1104 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 MTCYBP32-201ENST00000427945 1084 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RRM2P4-201ENST00000441721 562 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RPL34P20-201ENST00000442771 351 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 EIF2S2P2-201ENST00000447161 982 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AL050341.1-201ENST00000447743 313 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 OR51B8P-201ENST00000449892 769 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC245028.2-201ENST00000458673 253 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RPS27AP16-201ENST00000492222 470 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 RN7SL244P-201ENST00000493405 297 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 snoU109.6-201ENST00000516831 118 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC021451.1-201ENST00000523498 1129 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC083923.1-201ENST00000523708 376 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 VN1R85P-201ENST00000601587 426 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC005252.1-201ENST00000604518 1063 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC024941.1-201ENST00000612250 334 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 CYCSP41-201ENST00000616920 296 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 AC067931.1-201ENST00000624190 671 ntBASIC4.87□□□□□ -1.63
COL28A1Q2UY09 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL28A1Q2UY09 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL137100.1-201ENST00000556703 1620 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC015813.6-201ENST00000624409 5808 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL359643.1-201ENST00000404109 423 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 RNA5SP296-201ENST00000410523 111 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 COX5BP7-201ENST00000414780 274 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 OR13Z1P-201ENST00000416141 834 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 USP9YP21-201ENST00000420603 432 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms