Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTND4LP14-201ENST00000429447 288 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 RPL17P35-201ENST00000432217 549 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 MTND2P25-201ENST00000449028 610 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 AC091959.2-201ENST00000477363 321 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 PCNAP1-201ENST00000505363 709 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 AC010460.1-201ENST00000507087 466 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 IFITM8P-201ENST00000522529 394 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXC9P31274 LINC00557-201ENST00000563184 1279 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXC9P31274 AC040174.2-201ENST00000602701 465 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC9P31274 RNU6-84P-201ENST00000607737 102 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 OR51C1P-201ENST00000608504 942 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 AC074276.2-201ENST00000619891 348 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXC9P31274 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC9P31274 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 AC097461.1-201ENST00000568928 2821 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 SMG1P4-204ENST00000523028 4131 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC9P31274 MIR365B-201ENST00000362317 111 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC9P31274 OR6K3-202ENST00000368146 996 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 MIR554-201ENST00000384874 96 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC9P31274 AC007068.1-201ENST00000396690 844 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
HOXC9P31274 UBE2V1P15-201ENST00000407776 448 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 RN7SKP159-201ENST00000410657 292 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXC9P31274 HMGN2P27-201ENST00000427352 270 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 RPL31P20-201ENST00000449593 360 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 AC079804.1-201ENST00000461922 436 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC034236.1-201ENST00000469891 373 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC022336.1-201ENST00000475510 337 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXC9P31274 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXC9P31274 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 AC027455.1-201ENST00000574104 594 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC090079.2-201ENST00000575289 768 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AL356490.1-201ENST00000623079 479 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 AC080188.3-201ENST00000624842 748 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 CCAT2-201ENST00000630920 1752 ntBASIC5.61□□□□□ -1.51
HOXC9P31274 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.61□□□□□ -1.51
HOXC9P31274 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC9P31274 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC9P31274 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
HOXC9P31274 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXC9P31274 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC9P31274 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
HOXC9P31274 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 Z95331.1-201ENST00000623075 23112 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC9P31274 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 AP001002.1-201ENST00000625148 1513 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC9P31274 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXC9P31274 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC9P31274 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXC9P31274 CTSL3P-202ENST00000412179 788 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC9P31274 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC9P31274 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 RPL7P2-201ENST00000427639 268 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC9P31274 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.6□□□□□ -1.51
HOXC9P31274 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC9P31274 AP000949.1-201ENST00000438328 629 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC9P31274 AL445433.1-201ENST00000457507 257 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 RPS29P19-201ENST00000479709 171 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 AC146944.2-203ENST00000502493 354 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC9P31274 AC139495.1-202ENST00000513164 354 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 SETP12-201ENST00000514068 805 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC9P31274 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC9P31274 RN7SL435P-201ENST00000584418 282 ntBASIC5.6□□□□□ -1.51
HOXC9P31274 OR4H6P-202ENST00000603819 340 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms